Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1658 163 3e-35 seq1705 145 7e-30 seq1489 145 7e-30 seq1179 138 1e-27 seq1123 96.9 3e-15 >seq1658 Length=21299 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| ||||| || || ||||| ||||||||||||||||| Sbjct 17863 ATACCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCA 17804 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| | ||| ||||||||||| || || | ||||| ||||| || || || Sbjct 17803 CTCAATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGT 17744 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| || || ||||| ||| | ||| | ||| || || | |||| Sbjct 17743 GGAATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCG 17684 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||||| ||||||||||| | ||||| |||||||||||||| Sbjct 17683 ACTTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || |||| || || ||||| || || ||||| ||||| || || ||||| Sbjct 17406 ATACCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 17347 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| ||||| || | ||||| |||||||| || || Sbjct 17346 GACAAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGT 17287 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| ||||| ||||| ||||| ||| | ||||| || | || Sbjct 17286 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCC 17227 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || |||| ||||| |||||||||||||| Sbjct 17226 ACTTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 127 bits (140), Expect = 2e-24 Identities = 169/233 (73%), Gaps = 5/233 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | |||||| ||||| || || ||||| |||||||| || ||||| Sbjct 18092 ATACCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 18033 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| ||| ||||| ||||| || || | |||||||| ||||| || || Sbjct 18032 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 17973 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC---TTCTACGGTGTCGGAAGAC 45287 || || |||||||||||||||||||| ||| || | ||| | || || || | | Sbjct 17972 GGGATTCCTTCTTTATCTTGAATTTTGGCTTT--TCACATTTTCGATTGTATCTGATGGC 17915 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | |||| ||||| || || | ||| || || || |||||||| Sbjct 17914 TCAACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || |||||||||||||| ||||| || Sbjct 17635 ATGCCACCACGTAGACGTAAGACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCA 17576 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||| || || | |||||||||||||| || || Sbjct 17575 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 17516 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||||||||| |||||| ||| | ||| | ||||| || | ||| Sbjct 17515 GGAATACCCTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 17456 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 ||||| || |||| || || || |||| ||||| ||||| ||||| Sbjct 17455 ACTTCCAGTGTAATAGTCTTACCAGTTAAGGTTTTGACAAAGATTTG 17409 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 45107 TTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 ||||| |||| || || || | || || ||||| || || ||||| || || || || Sbjct 18326 TTTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTG 18267 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 |||||| | || ||| ||||||||||| || || | ||||| |||||||| Sbjct 18266 TAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGA 18207 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || || || || |||||||| ||||||||||| ||| | ||| | ||| || || Sbjct 18206 TCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGAT 18147 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || | ||||| || || | ||||||||| || |||||||| Sbjct 18146 GGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 >seq1705 Length=717327 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || ||||| ||||||||||||||||| Sbjct 502430 ATACCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCA 502371 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| ||| ||||| ||||| || || | ||||| |||||||| || || Sbjct 502370 CTCAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGT 502311 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| || |||||||| ||| | ||| | ||| ||||| | |||| Sbjct 502310 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCG 502251 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || |||||||| | ||||| |||||||||||||| Sbjct 502250 ACTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || |||||||||||||| || |||||| Sbjct 501974 ATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 501915 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| ||||| || | ||||||||||||||||| || Sbjct 501914 GACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGT 501855 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| ||||| ||||| ||| | ||||| || | || Sbjct 501854 GGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCC 501795 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || | ||||| || ||||||||||| Sbjct 501794 ACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 502658 ATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 502599 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| ||| ||||| ||||| || || | |||||||| ||||| || || Sbjct 502598 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 502539 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||||||||| ||| | ||| | || || || | ||| Sbjct 502538 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCA 502479 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || | ||| || || ||||||||||| Sbjct 502478 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || ||||| |||||||| |||||||| Sbjct 502202 ATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA 502143 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||| || || | |||||||||||||| || || Sbjct 502142 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 502083 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| |||||| ||| | ||| | ||||| || | ||| Sbjct 502082 GGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 502023 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || |||| ||||| |||||||||||||| Sbjct 502022 ACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 45107 TTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 ||||| |||| || || || | || || ||||| || || ||||| || || || || Sbjct 502892 TTTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTG 502833 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 |||||| | || ||| ||||||||||| || || | ||||| |||||||| Sbjct 502832 TAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGA 502773 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || || || || |||||||| ||||||||||| ||| | ||| | ||| || || Sbjct 502772 TCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGAT 502713 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || | ||||| || || | ||||||||| || |||||||| Sbjct 502712 GGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | ||| || | ||||| || ||||||||||| |||||||||||| Sbjct 501746 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCG 501687 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || |||||||| || || | ||||| |||||||| || || Sbjct 501686 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 501627 Query 45231 GGAATGCCT 45239 ||||| ||| Sbjct 501626 GGAATACCT 501618 >seq1489 Length=23360 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || ||||| ||||||||||||||||| Sbjct 5559 ATACCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCA 5618 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| ||| ||||| ||||| || || | ||||| |||||||| || || Sbjct 5619 CTCAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGT 5678 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||| || |||||||| ||| | ||| | ||| ||||| | |||| Sbjct 5679 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCG 5738 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || |||||||| | ||||| |||||||||||||| Sbjct 5739 ACTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || || ||||| || || |||||||||||||| || |||||| Sbjct 6015 ATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 6074 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| |||||||| ||||| || | ||||||||||||||||| || Sbjct 6075 GACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGT 6134 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| ||||| ||||| ||| | ||||| || | || Sbjct 6135 GGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCC 6194 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || | ||||| || ||||||||||| Sbjct 6195 ACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||||| ||||| || || ||||| |||||||| || ||||| Sbjct 5331 ATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 5390 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| ||| ||||| ||||| || || | |||||||| ||||| || || Sbjct 5391 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 5450 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||||||||| ||| | ||| | || || || | ||| Sbjct 5451 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCA 5510 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| ||||| || || | ||| || || ||||||||||| Sbjct 5511 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || ||||| || || ||||| |||||||| |||||||| Sbjct 5787 ATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA 5846 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||| || || | |||||||||||||| || || Sbjct 5847 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 5906 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || |||||||||||||| |||||| ||| | ||| | ||||| || | ||| Sbjct 5907 GGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 5966 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || |||| ||||| |||||||||||||| Sbjct 5967 ACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 45107 TTTTA--TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTA 45164 ||||| |||| || || || | || || ||||| || || ||||| || || || || Sbjct 5097 TTTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTG 5156 Query 45165 TAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGG 45224 |||||| | || ||| ||||||||||| || || | ||||| |||||||| Sbjct 5157 TAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGA 5216 Query 45225 TCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAA 45284 || || || || |||||||| ||||||||||| ||| | ||| | ||| || || Sbjct 5217 TCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGAT 5276 Query 45285 GACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| | || | ||||| || || | ||||||||| || |||||||| Sbjct 5277 GGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | ||| || | ||||| || ||||||||||| |||||||||||| Sbjct 6243 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCG 6302 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || |||||||| || || | ||||| |||||||| || || Sbjct 6303 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 6362 Query 45231 GGAATGCCT 45239 ||||| ||| Sbjct 6363 GGAATACCT 6371 >seq1179 Length=350002 Score = 138 bits (152), Expect = 1e-27 Identities = 511/782 (65%), Gaps = 44/782 (6%) Strand=Plus/Plus Query 123396 TTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGG 123455 || || || || ||| |||| |||||||||||| ||| || || || || ||||| Sbjct 62009 TTCTATGCATTGTGGATACCGGATTTGTTTATGAAACGTGTTGAAATGGATGGTATGTGG 62068 Query 123456 TCGCTCATGTGTCCCGATCGGTGTCCCGG-CTTGAGCGACGTTTACGGCAATCAGTTTGA 123514 || | |||||||| || |||||||| ||| | | ||| | || | || || Sbjct 62069 TCATTGATGTGTCCAAATGAATGTCCCGGACTTCATGAATGTTGGGGTGAAGAA-TTCGA 62127 Query 123515 CGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACA--GGTTAGTCAGGTTCCGGCACGT 123572 || | || | ||||| ||||| ||||| | ||| | || || |||| | Sbjct 62128 AAAGCTATATGAACAATATGAGCGTGAAGGTCGTTATCGGTCA--CAAGTGAAAGCACAT 62185 Query 123573 GATTTGTTCAAATTT---ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTC 123629 ||||| | ||| ||| | || ||||| | ||||| || || || |||||| | Sbjct 62186 GATTTATGG---TTTGCCATTTTGGATGCACAAATTGAAACTGGTACTCCATACATGGTA 62242 Query 123630 TACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGT 123689 || ||||| || || | ||| | ||||| || |||||||| || |||||| Sbjct 62243 TATAAAGATCATTGTAATCGTAAATCAAATCAACAAAATTTGGGAACCATCAAATGTTCA 62302 Query 123690 AATCTTTGCTCCGAAATTATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATT 123747 |||||||| | |||||| | ||||| || | || ||| || | ||||| ||||||| Sbjct 62303 AATCTTTGTACGGAAATTGTTGAATATTCATCA--GCTGATGAAATTGCCGTTTGTAATT 62360 Query 123748 TGGCTTCGATTTGCGTGAATCGTTGCGTCGA---AAACGGCGCTTTTAATTTCCAAACGC 123804 ||||||| |||| || |||| ||||| ||| || ||| |||| | | Sbjct 62361 TGGCTTCAATTTCATTGCCACGTTTTGTCGATCCAAA--GCTTTTTACATTTGATTATGA 62418 Query 123805 TCAAACGCATAACAAAAACT----GTAGT---AAAGAATTTGAACAAAATTATCGATGTT 123857 | |||| || || ||| | ||| | ||| ||||||||||||||||||||| | Sbjct 62419 T-AAACTCA-AAGAAATTGTTAAAGTAATGACAAAAAATTTGAACAAAATTATCGATAGT 62476 Query 123858 AATTTTTATCCTTTGGAGGAAGCG---CGTTTGTCTAATTTGAAACACAGACCGGTCGGA 123914 ||||||||||| || ||||||| ||| || ||| | || ||||| | ||| Sbjct 62477 AATTTTTATCCATTACCGGAAGCGAAACGT---TCGAATCTACGTCATCGACCGATTGGA 62533 Query 123915 GTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGAC 123974 | || | ||||| || ||||| || || | |||| || || ||||| | Sbjct 62534 ATTGGTGTACAAGGTTTAGCCGATGCATTCAACTTAATGCGTTATCCATATGAAAGTCTC 62593 Query 123975 GAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCG 124034 ||||| || | |||| |||||| |||||||||||||| || || ||||| || Sbjct 62594 GAAGCTAAACAAATGAATATTCAAATATTTGAAACAATTTATTATGGTGCATTGGAAGCA 62653 Query 124035 AGCTGCGAACTTGC-GAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGG---C 124090 || || ||| | || ||||| | ||| | || |||| || | || || | | Sbjct 62654 AGTTGTGAATTGGCTGAAAAAT-TTGGCCCATATGAAACATATGAAGGATCACCAGTATC 62712 Query 124091 GAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTG 124150 || ||||||| | || || || |||||||| ||||| || || | ||||| || Sbjct 62713 GA---AAGGTATTCTACAATATGATATGTGGAACCGCACACCAACTGATCTTTGGGATTG 62769 Query 124151 GA 124152 || Sbjct 62770 GA 62771 >seq1123 Length=366939 Score = 96.9 bits (106), Expect = 3e-15 Identities = 466/737 (63%), Gaps = 12/737 (2%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 ||||| ||| ||||| ||||||| || || ||||| ||| | || || || || || Sbjct 24219 ATTATTGAATCACAAATCGAAACTGGCACACCGTATATGGTTTATAAGGATCATTGTAAT 24160 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 | ||| | ||||| || | || ||||| |||||| ||||||||| | || ||| Sbjct 24159 CGTAAATCAAATCAACAAAATCTTGGTACAATCAAATGTTCTAATCTTTGTACGGAGATT 24100 Query 123708 ATCGAATA--CAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGA 123765 | ||||| || | | ||| || | || || |||||||| || |||||| ||| Sbjct 24099 GTGGAATATTCATCTAAA--GATGAAATTGCTGTCTGTAATTTAGCCTCGATTGCTTTGA 24042 Query 123766 A-----TCGTTGCGTCGAAAACGGCGCTTTTA--ATTTCCAAACGCTCAAACGCATAACA 123818 | | |||| || ||| || | || |||| ||| | ||| || Sbjct 24041 ACAAATTTGTTGA-TCATAAAAATCGAATCTATGATTTTAAAAAATTGAAATCGATTGTT 23983 Query 123819 AAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAA 123878 ||| ||| ||| | |||||| |||| ||||||| || |||||| | |||| Sbjct 23982 AAAGTTGTCACTCGTAATCTAAACAAAGTTATTGATGTTACTTATTATCCCGTACCGGAA 23923 Query 123879 GCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 || || | || ||| | || ||||| | || | || ||||||| |||||||| Sbjct 23922 GCACGATATTCGAATCTTCGTCATCGACCGATAGGTATCGGTGTTCAAGGTTTGGCCGAT 23863 Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAA 123998 || || | | |||| || |||||||| || ||||| ||||| |||| || Sbjct 23862 GCATTCATTCTAATGCGTTATCCATACGAAAGTGAAGAAGCTCGATTGCTCAATATTCAG 23803 Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCAC 124058 || |||||||||||||| || || || || || || || ||| | || || | Sbjct 23802 ATTTTTGAAACAATTTATTATGGTGCATTAGAAGCAAGTTGTGAATTGGCTGAACGAAAT 23743 Query 124059 GGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATG 124118 || | || |||| || | || || | | ||||| | |||| |||||| Sbjct 23742 GGTCCATATGAAACGTATGAAGGATCACCAGTATCTAAAAGTATTCTACAGTTTGACATG 23683 Query 124119 TGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACG 124178 |||||| | ||| ||| | | ||| | |||| || ||| ||| || || | | Sbjct 23682 TGGAATCGTCAACCAACATCTCTTTGGAATTGGAACGATTTGAAAGCTCGAATTGCAAAA 23623 Query 124179 CACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATT 124238 || ||| | || || || | || || ||||| || || | || || |||||| Sbjct 23622 CATGGTATACGAAATAGTTTGCTTGTAGCTCCAATGCCTACAGCTTCGACAGCACAAATT 23563 Query 124239 TTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTA 124298 | || ||||| ||||| || || || | || | ||| | ||| |||| || | Sbjct 23562 CTTGGGAACAATGAATCTTTTGAACCATATACAAGTAATATATACACAAGACGTGTTCTT 23503 Query 124299 GCCGGCGATTTTCAAGT 124315 |||| || ||||| || Sbjct 23502 TCCGGAGAATTTCAGGT 23486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993561031760