Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1179 143 3e-29 seq659 84.2 3e-11 >seq1179 Length=350002 Score = 143 bits (158), Expect = 3e-29 Identities = 357/535 (67%), Gaps = 14/535 (3%) Strand=Plus/Minus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||||||| | || || ||||||| || |||| ||||| ||| |||| |||||||| Sbjct 62740 CCACATATCATATTGTAGAATACCTTTCGATACTGGTGATCCTTCATATGTTTCATATGG 62681 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 ||| || |||||||| | || || || | || | | ||| ||||| ||||| Sbjct 62680 GCCAAATTTTTCAGCCAATTCACAACTTGCTTCCAATGCACCATAATAAATTGTTTCAAA 62621 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATA-A 116242 || || ||||||| || || ||| ||| | | || | ||| || | | Sbjct 62620 TATTTGAATATTCATTTGTTTAGCTTCGAGACTTTCATATG-GATAACGCATTAAGTTGA 62562 Query 116243 ATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC--TT 116300 || |||| || | |||||| ||||| | ||||| || ||||| | | ||| || || Sbjct 62561 ATGCATCGGCTAAACCTTGTACACCAATTCCAATCGGTCGATGACGTAGATTCGAACGTT 62502 Query 116301 TCGAG--CGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTG 116358 ||| |||| | ||||||||||| |||||||||| | || | |||||| || Sbjct 62501 TCGCTTCCGGT----AATGGATAAAAATTACTATCGATAATTTTGTTCAAATTTTTTGTC 62446 Query 116359 ACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACA 116418 | || || ||||| | || || || |||||||| | | || | || |||| Sbjct 62445 ATTACTTTAACAATTTCTTTGAGTTTATCATAATCAAATGTAAAAAGCTTTGGATCGACA 62386 Query 116419 TACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATC--CTTATCAGTGT 116476 | || | | ||||| |||| |||||| || | | ||||| || || | | | Sbjct 62385 AAACGTGGCAATGAAATTGAAGCCAAATTACAAACGGCAATTTCATCAGCTGATGAATAT 62326 Query 116477 ACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTG 116536 || | |||||||||||| | |||||||| || ||||| ||||| || | |||||||| Sbjct 62325 --TCAACAATTTCCGTACAAAGATTTGAACATTTGATGGTTCCCAAATTTTGTTGATTTG 62268 Query 116537 ACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 | || ||||| ||| || || | ||| ||||| || || || || |||| Sbjct 62267 ATTTACGATTACAATGATCTTTATATACCATGTATGGAGTACCAGTTTCAATTTG 62213 >seq659 Length=572639 Score = 84.2 bits (92), Expect = 3e-11 Identities = 263/405 (65%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 ||||| || ||||| || | || || || | ||||| ||||| || || || || || Sbjct 248148 CGATCGAAACGACCCGGCCTTAGCAGTGCTTTATCAAGAATATCTATACGATTAGTAGCG 248207 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || | ||||||| | | ||| || |||||||| || ||| | |||||| Sbjct 248208 GCCAATACAACGACATTGGAAGCCGTATTAAAACCATCCATTTCGACCAATAATTGATTC 248267 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTTACCGACG 12881 | || | ||| |||| || | ||| | ||| |||| ||| ||| Sbjct 248268 AATGTATTTTCCTGTTCGCTATGGCCACCTATATTGCGACCACCACGTTTACGACCAACG 248327 Query 12882 GCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATA 12941 || |||||||| ||||| || | || || || ||||| ||| || | | |||| ||| Sbjct 248328 GCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 248387 Query 12942 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA-ACA 13000 ||||| || | | ||| ||||| |||||||| || | ||| | | | | || || Sbjct 248388 TCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCCAGATACG 248447 Query 13001 TTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 13060 || ||||| || || || | |||||| || | ||| || | || || || || || Sbjct 248448 GTG-ATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTTACCAGT 248506 Query 13061 CCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||||| || | ||||||||||| ||| ||| | ||||| Sbjct 248507 ACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACC 248551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494116958960