Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1658 122 2e-22 seq1705 113 1e-19 seq1489 113 1e-19 >seq1658 Length=21299 Score = 122 bits (134), Expect = 2e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||| |||||||| || || ||||||| || || ||| ||| || Sbjct 17854 CGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTT 17795 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||| || || ||||| || || | ||| || || || || ||||||| Sbjct 17794 CTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCT 17735 Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| || ||| |||| |||| ||| | ||| |||| || || || ||||| Sbjct 17734 TCTTTGTCCTGGAT-TTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAA 17676 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||||| ||||||||||| Sbjct 17675 AGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTG 17637 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || || || || || ||||| | |||||| |||| |||||| | ||||| ||| Sbjct 17385 ACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCCTCC 17326 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||||||||| ||||| | || ||||| || || || |||||| || || Sbjct 17325 AATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGG 17266 Query 199541 ATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 || ||| |||| || ||| | ||||| | || ||| || ||||| || || || || Sbjct 17265 AT-TTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTTTT 17207 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || | ||||| ||||||||||| Sbjct 17206 ACCAGTTAAGGTTTTGACAAAAATTTG 17180 >seq1705 Length=717327 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || |||||| |||||||| || || ||||||| ||| || |||| || || Sbjct 502193 CGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTA 502134 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || || || || | || ||||| || || || ||| Sbjct 502133 CGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCT 502074 Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || |||||||| ||| ||| | ||||| | || ||| || ||||| Sbjct 502073 TCTTTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAA 502015 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || | ||||| ||||||||||| Sbjct 502014 TGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTG 501976 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 |||||| ||||| || || || ||||||| || || ||| ||| || | |||||||| Sbjct 502410 GACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTC 502351 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || ||| || ||||| ||||| | || ||||| || || || |||||| ||||| Sbjct 502350 CAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTG 502291 Query 199540 AATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 ||| ||| |||| ||| ||| | ||| || | || || || ||||| || || |||| Sbjct 502290 AAT-TTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCT 502232 Query 199599 TACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || | ||||| ||||||||||| Sbjct 502231 TGCCGGTCAATGTTTTGACAAAAATTTG 502204 >seq1489 Length=23360 Score = 113 bits (124), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | || |||||| |||||||| || || ||||||| ||| || |||| || || Sbjct 5796 CGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTA 5855 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || || || || | || ||||| || || || ||| Sbjct 5856 CGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCT 5915 Query 199529 TCTCGCTCCTGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || || |||||||| ||| ||| | ||||| | || ||| || ||||| Sbjct 5916 TCTTTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAA 5974 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || | ||||| ||||||||||| Sbjct 5975 TGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTG 6013 Score = 111 bits (122), Expect = 4e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 |||||| ||||| || || || ||||||| || || ||| ||| || | |||||||| Sbjct 5579 GACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTC 5638 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 || ||| || ||||| ||||| | || ||||| || || || |||||| ||||| Sbjct 5639 CAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTG 5698 Query 199540 AATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCT 199598 ||| ||| |||| ||| ||| | ||| || | || || || ||||| || || |||| Sbjct 5699 AAT-TTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCT 5757 Query 199599 TACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || | ||||| ||||||||||| Sbjct 5758 TGCCGGTCAATGTTTTGACAAAAATTTG 5785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178895830984302