Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1705 127 1e-24 seq1658 127 1e-24 seq1489 127 1e-24 seq438 102 6e-17 >seq1705 Length=717327 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||||||| | ||| | ||| |||||| || || || ||||||| |||| || || Sbjct 502871 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 502812 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| ||| ||||||| || || |||||||| | || | ||||||||| Sbjct 502811 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 502752 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | || || | |||||| ||||| || ||| Sbjct 502751 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 502692 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || |||||||||||||| || ||||| Sbjct 502691 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | || | ||| | |||| ||||||||| || || ||||| | Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| ||||| ||| ||||||| || ||||||||||| | || Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||| | | | | ||| |||| || || Sbjct 502535 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 502476 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||||||||| || ||||| || ||||| || ||||| Sbjct 502475 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||||||| || ||| ||||| ||||||||||||| | Sbjct 501743 CCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCGGAC 501684 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 ||| || |||| || |||||||| || |||| || ||||| |||||||| Sbjct 501683 AAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATC 501631 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||||||||| || ||||||||| || |||||||||| | Sbjct 501443 CCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 501384 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 || || |||| ||||||||||| || |||| || || | |||||||| Sbjct 501383 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATC 501331 >seq1658 Length=21299 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||||||| | ||| | ||| |||||| || || || ||||||| |||| || || Sbjct 18305 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 18246 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| ||| ||||||| || || |||||||| | || | ||||||||| Sbjct 18245 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 18186 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | || || | |||||| ||||| || ||| Sbjct 18185 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 18126 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || |||||||||||||| || ||||| Sbjct 18125 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39510 TACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTC 39569 ||| | ||| | ||| ||||||||| || || ||||| | |||| || |||| || Sbjct 17386 TACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCCTC 17327 Query 39570 CAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCA 39629 |||||| || ||| |||| || || || |||||||| | || | ||||||||||| Sbjct 17326 CAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTG 17267 Query 39630 TATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 ||||| ||| | | | | ||||| | |||||| ||||| ||||| ||||| Sbjct 17266 GATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTTTT 17207 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| ||||| ||||| || || || ||||| Sbjct 17206 ACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 5/230 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || | ||| | |||| ||||||||| || || ||||| | Sbjct 18089 CCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 18030 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| ||||| ||| ||||||| || ||||||||||| | || Sbjct 18029 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 17970 Query 39613 ACGCCTTCTTTGTCGCATATTTT---TTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||||| || ||||| || | || ||| | ||| |||| || Sbjct 17969 ATTCCTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCG--ATTGTATCTGATGGCTCA 17912 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||||||||| || ||||| || ||||| || ||||| Sbjct 17911 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| || | ||| | ||| ||||||||| ||||||||||| | Sbjct 17860 CCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTC 17801 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || | |||| ||||||||||| ||| ||||||| ||||| || ||||| | || Sbjct 17800 AATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 17741 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| ||||| ||| | | | | || |||| || || Sbjct 17740 ATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACT 17681 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||||||||| ||||| || || || ||||| || || || |||||| Sbjct 17680 TCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||||||| || ||||||||| ||||| ||||||| | Sbjct 17175 CCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGGAC 17116 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 ||| || |||| || |||||||| || |||| || ||||| |||||||| Sbjct 17115 AAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATC 17063 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||||||||| || ||||||||| || |||||||||| | Sbjct 16875 CCTCCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 16816 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 || || |||| ||||||||||| || |||| || || || |||||||| Sbjct 16815 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGCTGATC 16763 >seq1489 Length=23360 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 |||||||| | ||| | ||| |||||| || || || ||||||| |||| || || Sbjct 5118 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 5177 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||||||||| ||| ||||||| || || |||||||| | || | ||||||||| Sbjct 5178 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 5237 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | || || | |||||| ||||| || ||| Sbjct 5238 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 5297 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||||||| || |||||||||||||| || ||||| Sbjct 5298 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| | || | ||| | |||| ||||||||| || || ||||| | Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| ||||| ||||| ||| ||||||| || ||||||||||| | || Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | |||||||| || ||||| ||| | | | | ||| |||| || || Sbjct 5454 ATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACT 5513 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||||||||| || ||||| || ||||| || ||||| Sbjct 5514 TCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||||||| || ||| ||||| ||||||||||||| | Sbjct 6246 CCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCGGAC 6305 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 ||| || |||| || |||||||| || |||| || ||||| |||||||| Sbjct 6306 AAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATC 6358 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||||||||| || ||||||||| || |||||||||| | Sbjct 6546 CCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCGGAC 6605 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 || || |||| ||||||||||| || |||| || || | |||||||| Sbjct 6606 AATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATC 6658 >seq438 Length=626939 Score = 102 bits (112), Expect = 6e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 42515 TTACCTAAATCACCAAGATGTCGTTCTTCATCATGCGGTCCGCCGTGTTCTTTATGAAAA 42574 || ||||||||||||| ||| ||||||||||| ||| | || ||| |||| || Sbjct 506841 TTGCCTAAATCACCAACATGACGTTCTTCATCGGCAGGTGCACCATGTGTCTTATTGAAT 506782 Query 42575 GGATTAAAATGTTCACCAGCCGATGTACATCCATTGGTGGTATCTCCAAATTCATG 42630 |||||| ||||| | |||||||||||||| ||||| ||| | || ||||||||||| Sbjct 506781 GGATTATAATGTGCTCCAGCCGATGTACAGCCATTAGTGTTGTCGCCAAATTCATG 506726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362377534698