Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1705 176 5e-39 seq1658 96.9 3e-15 seq1489 86.0 6e-12 >seq1705 Length=717327 Score = 176 bits (194), Expect = 5e-39 Identities = 419/622 (67%), Gaps = 16/622 (3%) Strand=Plus/Plus Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 |||| ||||| ||||| || ||||| || || || || | ||||| | ||| || Sbjct 625729 AACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAA 625788 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || || | || ||||||||||| |||||||| |||||||| || ||||| || || Sbjct 625789 AATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCA 625848 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 ||||| |||| || || ||||| || || || | || || || |||| || || Sbjct 625849 GAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAA 625908 Query 133066 T--TGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 | | |||| |||| || | ||||||| || |||| || || || || | || Sbjct 625909 TCATCCTGGG--TCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAA-TTA 625965 Query 133124 CG-ATGGCGTTCAACAAACGGAGTTTCTCTTC-CGAGGAACGCA--CGTAGGTGTCGATG 133179 || ||||| || || | | | | | | ||| | | || | | | || || | ||| Sbjct 625966 CGTATGGCATTGAATAGAA--AATCT-TGTTCACTACGATCCGATACATATGTATTGATC 626022 Query 133180 AGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 | ||||||||||| || || || || || ||||| ||||||||||| ||||| || Sbjct 626023 AATAATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAA 626082 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 || || || | || || || || ||||| ||| |||||||||| ||||| || Sbjct 626083 CGTGCTTCTGGTATTTGTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATA 626142 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 || ||||| || || ||||| |||| || || | |||||||| || || | ||| Sbjct 626143 CCATCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTC 626202 Query 133360 AAGCGCTCCCAGTCGCGCGTGTCCTTGGAC--AGGTCCACCTCCTCGACGGTCCAAAACG 133417 || | | ||| | | | || ||| || ||||| || || || ||||| || | Sbjct 626203 AATTGATTCCAATGGGCAATATC--ACGACTTAGATCCACTTCTTCAACTGTCCAGAATG 626260 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 | || || |||||||| ||||| |||| ||||| |||||| || ||||| | |||| Sbjct 626261 ATGCTTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAA 626320 Query 133478 ACCGGCGGGGGTTTTCGCGCAA 133499 | || || ||||| ||||| Sbjct 626321 AACGATTTGGATTTTCACGCAA 626342 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||||||||| | || || ||||| |||||| | || || || | | Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 502716 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||| | |||||||| || || || | || || Sbjct 502717 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 502776 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || ||| | |||| || || ||||| |||| || | || || | ||| |||||| Sbjct 502777 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 502836 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || ||| | || || ||| | || ||||| Sbjct 502837 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCG 502871 >seq1658 Length=21299 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || ||||||||||| || | || |||||| | | Sbjct 17634 ATGCAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATCA 17693 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || ||||| | |||| ||||||| |||||||| |||||||| | || || Sbjct 17694 GATACCATTGAAAACG-TGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATCA 17752 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || || ||||| |||| || | | || | | || || || Sbjct 17753 ACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAA 17812 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||| | || || ||| | ||| ||||| Sbjct 17813 TATCCAAAAAGAATCTACTCTCCATCTTGTGTTGCGT 17849 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || | || || ||||| || || | || || ||| | | Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 17921 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | |||| ||||| | || ||||| ||||| || | || || Sbjct 17922 GATACAATCGAAAATGTGAAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA 17981 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || || |||||| |||| || | || ||| | | || ||||| Sbjct 17982 GCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAA 18041 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||| | || || ||| | ||| ||||| Sbjct 18042 CATCCAAAAAGAATCCACTCTCCATCTTGTGTTGCGT 18078 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||||||||| | || || ||||| |||||| | || || || | | Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 18150 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||| | |||||||| || || || | || || Sbjct 18151 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 18210 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || ||| | |||| || || ||||| |||| || | || || | ||| |||||| Sbjct 18211 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 18270 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || ||| | || || ||| | || ||||| Sbjct 18271 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCG 18305 >seq1489 Length=23360 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||||||||| | || || ||||| |||||| | || || || | | Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 5273 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| ||||| | |||||||| || || || | || || Sbjct 5272 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 5213 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || ||| | |||| || || ||||| |||| || | || || | ||| |||||| Sbjct 5212 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5153 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || || ||| | || || ||| | || ||||| Sbjct 5152 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCG 5118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162133815040