Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1179 165 1e-35 seq1123 158 2e-33 seq659 123 3e-23 seq1300 93.3 5e-14 >seq1179 Length=350002 Score = 165 bits (182), Expect = 1e-35 Identities = 458/694 (66%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 112299 CAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 112358 |||| || |||||||| ||||| ||| | || ||||| ||||| | || ||| Sbjct 62213 CAAATTGAAACTGGTACTCCATACATGGTATATAAAGATCATTGTAATCGTAAATCAAAT 62272 Query 112359 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACA 112418 ||| | |||||||| ||||| |||| || || ||||| ||||| | |||| | || Sbjct 62273 CAACAAAATTTGGGAACCATCAAATGTTCAAATCTTTGTACGGAAATTGTTGAATATTCA 62332 Query 112419 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 112478 ||||| | || || ||||| | || ||||| | | || | ||| ||| Sbjct 62333 TCAGCTGATGAAATTGCCGTTTGTAATTTGGCTTCAATTTCATTGCCACGTTTTGTCGAT 62392 Query 112479 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAA 112538 ||| || |||||||||||||| |||||| | ||| || ||| | |||||| Sbjct 62393 CCAAAGCTTTTTACATTTGATTATGATAAACTCAAAGAAATTGTTAAAGTAATGACAAAA 62452 Query 112539 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA--ATCTA 112596 || | |||| | |||| ||||| |||||||| || | | | || || || | Sbjct 62453 AATTTGAACAAAATTATCGATAGTAATTTTTATCCATTACCGGAAG--CGAAACGTTCGA 62510 Query 112597 ATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTT 112656 || | | || || || ||||| | ||||| |||||| | || |||| ||||| ||| Sbjct 62511 ATCTACGTCATCGACCGATTGGAATTGGTGTACAAGGTTTAGCCGATGCATTCA-ACTTA 62569 Query 112657 GT-CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACA 112715 | || | ||| ||| |||||| || |||| ||| | |||||||| ||| Sbjct 62570 ATGCGTTATCCATATGAAAGTCTCGAAGCTAAACAAATGAATATTCAAATATTTGAAACA 62629 Query 112716 ATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAA 112775 || ||| | | || | || || |||| || ||||| || ||| ||||||||| Sbjct 62630 ATTTATTATGGTGCATTGGAAGCAAGTTGTGAATTGGCTGAAAAATTTGGCCCATATGAA 62689 Query 112776 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAG 112835 || | ||| || || |||| || |||| | || |||| |||||||| |||| | Sbjct 62690 ACATATGAAGGATCACCAGTATCGAAAGGTATTCTACAATATGATATGT-GGAACCGCAC 62748 Query 112836 ACCAAGCT--TCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 112893 ||||| || || | || ||| | | | || | | || | || ||| | | Sbjct 62749 ACCAA-CTGATCTTTGGGATTGGAATGAATTGAAAGCAAAAATTGCTCAAAATGGTATAC 62807 Query 112894 GTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 112953 | || ||| | | | ||||||||||||||||| || || |||||||| || || |||| Sbjct 62808 GAAATAGTTTACTTGTTGCACCAATGCCAACAGCATCTACAGCACAAATTTTAGGCAATA 62867 Query 112954 ATGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||||| |||||||| || || | ||||| || Sbjct 62868 ATGAATCATTTGAACCATATACATCAAACATTTA 62901 >seq1123 Length=366939 Score = 158 bits (174), Expect = 2e-33 Identities = 458/690 (66%), Gaps = 20/690 (3%) Strand=Plus/Minus Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 || |||| ||| ||||| ||||| |||||| |||| || || ||||| | || Sbjct 24210 TCACAAATCGAAACTGGCACACCGTATATGGTTTATAAGGATCATTGTAATCGTAAATCA 24151 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 |||||| | ||| | ||| ||||| |||| || || ||||| || || |||||| | Sbjct 24150 AATCAACAAAATCTTGGTACAATCAAATGTTCTAATCTTTGTACGGAGATTGTGGAATAT 24091 Query 112416 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 112475 || |||||||| | ||||| ||||| | || || || ||| | ||| | ||| Sbjct 24090 TCATCTAAAGATGAAATTGCTGTCTGTAATTTAGCCTCGATTGCTTTGAACAAATTTGTT 24031 Query 112476 GATCCAGAGACAAAGACATT-TGATTATGAAAAACTCCA--CGAAGTTACGAAAACTGTC 112532 |||| | | | | || | ||||| | ||||| | | ||| || ||| |||| Sbjct 24030 GATC-ATAAAAATCGAATCTATGATTTTAAAAAATTGAAATCGA--TTGTTAAAGTTGTC 23974 Query 112533 ACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAA 112592 || || ||||||| |||||||||| | || ||| ||||| | || || | Sbjct 23973 ACTCGTAATCTAAACAAAGTTATTGATGTTACTTATTATCCCGTACCGGAAGCACGATAT 23914 Query 112593 TCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATT 112652 || ||| | | || || || || ||| ||||||| |||||| | || |||| ||||||| Sbjct 23913 TCGAATCTTCGTCATCGACCGATAGGTATCGGTGTTCAAGGTTTGGCCGATGCATTCATT 23854 Query 112653 CTTTGTCGCCACGCATTTGATTCCGACGAAGC--GAAGGAAATCAATGCGCGTATATTTG 112710 || || | ||| || || ||||| || | ||||| | || |||| Sbjct 23853 CTAATGCGTTATCCATACGAAAGTGAAGAAGCTCGATTGC--TCAATATTCAGATTTTTG 23796 Query 112711 AGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCAT 112770 | ||||| ||| | | || | || || |||| || ||||| || ||||||||| Sbjct 23795 AAACAATTTATTATGGTGCATTAGAAGCAAGTTGTGAATTGGCTGAACGAAATGGTCCAT 23736 Query 112771 ATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAG 112830 ||||||| | ||| || || |||| || || | | || || ||||| |||||| | Sbjct 23735 ATGAAACGTATGAAGGATCACCAGTATCTAAAAGTATTCTACAGTTTGACATGTGGAATC 23676 Query 112831 GTGAGACCAAGCTTCACTACG--ACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAG 112886 || | ||||| | || || | | ||| ||| | | || | || || ||| | | Sbjct 23675 GTCA-ACCAA-CATCTCTTTGGAATTGGAACGATTTGAAAGCTCGAATTGCAA--AACAT 23620 Query 112887 GGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTT 112945 ||| | || || ||| | | | || |||||||| ||||| || || ||||||| |||| Sbjct 23619 GGTATACGAAATAGTTTGCTTGTAGCTCCAATGCCTACAGCTTCGACAGCACAAATTCTT 23560 Query 112946 GGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||| || ||||||| |||||||| || || Sbjct 23559 GGG-AACAATGAATCTTTTGAACCATATAC 23531 >seq659 Length=572639 Score = 123 bits (136), Expect = 3e-23 Identities = 272/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 ||||| || ||||| || | || || || | |||||| ||||| | ||||| || ||| Sbjct 248148 CGATCGAAACGACCCGGCCTTAGCAGTGCTTTATCAAGAATATCTATACGATTAGTAGCG 248207 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || | ||||| | | | | ||| |||||||||||| || ||| | || || Sbjct 248208 GCCAATACAACGACATTGGAAGCCGTATTAAAACCATCCATTTCGACCAATAATTGATTC 248267 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 16064 | || | |||| |||| || | ||| | | ||| |||| || ||| Sbjct 248268 AATGTATTTTCCTGTTCGCTATGGCCACCTATATTGCGACCACCACGTTTACGACCAACG 248327 Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 16124 |||||||| |||||||| || | |||||||| ||||| || || | | |||| | | Sbjct 248328 GCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 248387 Query 16125 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 16183 || || ||||| | || ||||| |||||||| || | ||| | || | | || || Sbjct 248388 TCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCCAGATACG 248447 Query 16184 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 16243 | |||||| || || |||| |||||| || | ||| || | ||||| ||||| || Sbjct 248448 GT-GATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTTACCAGT 248506 Query 16244 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 |||||| || | || ||||||||| ||||||||| || || Sbjct 248507 ACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACC 248551 >seq1300 Length=312748 Score = 93.3 bits (102), Expect = 5e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 176912 TTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAACC 176971 || || ||||||||||| ||||| || | ||| |||||||| ||| | || ||||| Sbjct 58730 TTACCTCGAAGAGGGAATACACCATATTTATCACGACCAACTACACCTAATCCAGCAACA 58789 Query 176972 GCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTGCCAGATTGTGCC 177031 | || | ||| ||||||||||| || || | || |||||||| | | || | | Sbjct 58790 ACAAGAGATTTGGCAGAATCACCTTCAGTTAGAATTAGTGTACAATCGATTGAATTTTTT 58849 Query 177032 GTACCCGCCTTGTTCGCATCATCCAATTTGGGAATACCAGTAATTTTGG 177080 ||||| || | ||| ||||| || | ||| ||||| ||||| | ||||| Sbjct 58850 GTACCAGCATCGTTTGCATCTTCTAGTTTAGGAATGCCAGTCAATTTGG 58898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620729162668320