Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1179 93.3 5e-14 seq1631 82.4 9e-11 >seq1179 Length=350002 Score = 93.3 bits (102), Expect = 5e-14 Identities = 440/686 (64%), Gaps = 15/686 (2%) Strand=Plus/Minus Query 110332 TATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTC 110391 ||||| | |||||||||||| | || |||| || ||| ||||| || | ||||| Sbjct 62328 TATTCAACAATTTCCGTACAAAGATTTGAACATTTGATGGTTCCCAAATTTTGTTGATTT 62269 Query 110392 GATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGAC 110451 ||||| || || ||| ||||| | ||||||||| ||||||||||| | |||| Sbjct 62268 GATTTACGATTACAATGATCTTTATATACCATGTATGGAGTACCAGTTTCAATTTGTGCA 62209 Query 110452 TTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG--CGTTAGCGAGACCTTCCT 110509 | | |||||| ||||| ||| || || || || || ||| ||||| Sbjct 62208 TCCAAAATGGCAAACCATAAATCATGTGCTTTCACTTGTGACCGATAACGA--CCTTCAC 62151 Query 110510 CCTCGTACTTGGTG-TACAAGTCCTCAAATTCCTGTCCGTACACAT-CAGAAAGACCCTT 110567 ||| || ||| | || | | || ||||| | || | |||| || ||| || Sbjct 62150 GCTCATA-TTGTTCATATAGCTTTTCGAATTCTTCACCCCA-ACATTCATGAAGTCCGGG 62093 Query 110568 CGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAG 110627 | | ||||| | | ||||| | ||| || ||||| | ||||| |||| Sbjct 62092 ACATTCATTTGGACACATCAATGACCACATACCATCCATTTCAACACGTTTCATAAACAA 62033 Query 110628 GTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTT 110687 || || ||||||| || |||| |||||||| ||| |||||| ||| || Sbjct 62032 ATCCGGTATCCACAATGCATAGAATAGGTCACGTGCACGTAGCTCTTCGGAACCAGTATT 61973 Query 110688 GAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGAT 110747 ||| ||||||||| | | ||||| | |||||||| || | ||||| ||| | Sbjct 61972 CTTTTTTAGATCCAAAAAGGCAAAAATATCTGCATGCCATGGCTCCAAATAGATAGCAAA 61913 Query 110748 GGATCCCTTACGA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCT 110804 | || ||| | ||| | || | ||||| ||||| ||| |||||| || | Sbjct 61912 TGCACCTGGACGTTTTCCACCACCTTGATCCACATAACGTGCAGTGTTATTGAATACACG 61853 Query 110805 GAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAAT-TCTGGACTTATTGG 110863 | ||| || | | |||| ||| |||||| ||||| ||| | || || || | Sbjct 61852 TAACATTGGTACTAAACCATTGGAAAAACCATTCGTACCAGCAATATATGAACC-ATGTG 61794 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACT 110923 |||||| || | || | ||||||||||| || | || ||| |||||| | Sbjct 61793 AACGAATACAATGAACATTAAGGCCAATACCACCGGCAGATTTCGAAATAATTGCACATT 61734 Query 110924 CTGTGAGTGTACCATAAATACCATCAATCGAATC-TGCCTTGTTGGCAATTAGAAAGCAA 110982 | | | |||| |||| || || ||||| ||| | | ||| |||| ||||| ||| Sbjct 61733 GTTTCAATGTATCATAGATGCCTTCAATGCTATCATCGCCCATTGTCAATAAGAAA-CAA 61675 Query 110983 GAAGACATCTGAGGACGAGGCGTTCC 111008 || ||||| || ||||| || || || Sbjct 61674 GATGACATTTGTGGACGTGGTGTACC 61649 >seq1631 Length=21602 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 31328 CGAGATTGGGGTCATGCGAAGGACTACGTGGAGGCCATGTGGCTCATGCTTCAACAAGAA 31387 ||||||||||| || || || || ||||| || |||||||| ||| | ||||| ||| Sbjct 13281 CGAGATTGGGGCCACGCACGTGATTATGTGGAAGCAATGTGGCTAATGTTACAACAGGAA 13222 Query 31388 CGTCCAGATGATTATGTCGTCGCAACAGGTAAATCACATTCTGTACGGGAGTT 31440 |||||| |||| ||| ||||||| ||| || ||||||| || || || || Sbjct 13221 AATCCAGAAGATTTTGTTATCGCAACTGGTGAAGCACATTCAGTTCGTGAATT 13169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588963440086800