Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1179 154 2e-32 seq659 129 7e-25 >seq1179 Length=350002 Score = 154 bits (170), Expect = 2e-32 Identities = 423/640 (66%), Gaps = 16/640 (3%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 || ||||| | || || |||||||| |||||||||| || || |||||||| || || Sbjct 62901 TAAATGTTTGATGTATATGGTTCAAATGATTCATTATTGCCTAAAATTTGTGCTGTAGAT 62842 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 ||||||||||||||||| | | | ||| || || | ||| |||| || | | Sbjct 62841 GCTGTTGGCATTGGTGCAACAAGTAAACTATTTCGTATACCATTTTGAGCAATTTTTGCT 62782 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || | ||| ||| || | | | || ||||| | |||| |||||||| |||| | Sbjct 62781 TTCAATTCATTCCAATCCCAAAGATCAG-TTGGTGTGCGGTTCC-ACATATCATATTGTA 62724 Query 106113 GCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCA 106172 | | |||| || || || || ||| |||| ||||| | || |||||||| Sbjct 62723 GAATACCTTTCGATACTGGTGATCCTTCATATGTTTCATATGGGCCAAATTTTTCAGCCA 62664 Query 106173 ATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCT 106232 ||||||| || || |||| | | | ||| || |||||||| || || |||||| | Sbjct 62663 ATTCACAACTTGCTTCCAATGCACCATAATAAATTGTTTCAAATATTTGAATATTCATTT 62604 Query 106233 CCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTT 106292 || ||||| ||| ||| || || || | ||| |||| || | ||||| Sbjct 62603 GTTTAGCTTCGAGACTTTCATATGGATAACGCATTAAGTTGAATGCATCGGCTAAACCTT 62544 Query 106293 GAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCG--CAGTCTCAACG 106348 | ||||| | ||||| |||| || || | ||| || |||||| | || | Sbjct 62543 GTACACCAATTCCAATCGGTCGATGACGTAGATTCGAACGTTTCGCTTCCGGT----AAT 62488 Query 106349 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 106408 ||||||||||| || || || | | ||| | |||||| || | | || ||||| Sbjct 62487 GGATAAAAATTACTATCGATAATTTTGTTCAAATTTTTTGTCATTACTTTAACAATTTCT 62428 Query 106409 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATT 106468 | ||||| ||||||||||| || | || | || |||| | ||| | | ||| Sbjct 62427 TTGAGTTTATCATAATCAAATGTAAAAAGCTTTGGATCGACAAAACGTGGCAATGAAATT 62368 Query 106469 GATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTCTGTAC 106526 || |||||||| ||||| || | ||||| || | || || || | |||||| |||| Sbjct 62367 GAAGCCAAATTACAAACGGCAATTTCATCAGCTGA--TGAATATTCAACAATTTCCGTAC 62310 Query 106527 ACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 106566 | | || |||| || || || |||||||| | ||| || Sbjct 62309 AAAGATTTGAACATTTGATGGTTCCCAAATTTTGTTGATT 62270 >seq659 Length=572639 Score = 129 bits (142), Expect = 7e-25 Identities = 273/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 ||||| || ||||| || | || || || | |||||| ||||| | ||||| || ||| Sbjct 248148 CGATCGAAACGACCCGGCCTTAGCAGTGCTTTATCAAGAATATCTATACGATTAGTAGCG 248207 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | ||||| | | | | ||| |||||||||||| || ||| | ||| || Sbjct 248208 GCCAATACAACGACATTGGAAGCCGTATTAAAACCATCCATTTCGACCAATAATTGATTC 248267 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || | |||| |||| || | ||| | | ||| |||| || ||| Sbjct 248268 AATGTATTTTCCTGTTCGCTATGGCCACCTATATTGCGACCACCACGTTTACGACCAACG 248327 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||| |||||||| || | ||| ||||| ||||| || || ||| |||| | | Sbjct 248328 GCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 248387 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9490 || ||||| | | | || ||||| |||||||| || | ||| | || | | || || Sbjct 248388 TCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCCAGATACG 248447 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | |||||| || || |||| |||||| || | ||| || | ||||| ||||| || Sbjct 248448 GT-GATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTTACCAGT 248506 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 |||||| || | || |||||||| ||||||||| || || Sbjct 248507 ACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACC 248551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589968218659440