Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1267 125 8e-24 >seq1267 Length=955761 Score = 125 bits (138), Expect = 8e-24 Identities = 504/776 (65%), Gaps = 37/776 (5%) Strand=Plus/Plus Query 154360 TATTCAATAAGTATCATAGTGAAACTGACATGATGAGATATATCTACGAGTTATGCTCTA 154419 |||||||| |||||||| |||||| | | || | ||||| | | || | Sbjct 519687 TATTCAATTCATATCATAGCGAAACTAATCTTATTCGTTATATGAAAAAATTGGAAAACA 519746 Query 154420 AAGATTTCTCATTAGTAAATGGTATGGTTCCACTTGGCAGTTGCACAATGAAATTAAATG 154479 |||| | ||||||||| || ||| | ||| | || || |||||||||||||||| Sbjct 519747 AAGACATATCATTAGTACATTCAATGATACCATTAGGATCATGTACAATGAAATTAAATG 519806 Query 154480 CAGCAGCAGAACTAATGCC-TGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACA 154538 | | | ||| | || || ||| |||||| | | | | | || |||||| ||| Sbjct 519807 CCACCACCGAAATGATACCATGT-TCATGGCCAATGATAACCGATGTACATCCATATATT 519865 Query 154539 CCTATGAT-ACAGACCATGGGTTATCAGAAAATTATAGATGACTTACAGAAATGGT-TAT 154596 || | || |||| | | |||||||| | | || |||| | | | | | | | | Sbjct 519866 CC-ACCATCACAGGCTAAAGGTTATCAAGTACTAATCAATGAACTGGA-ACACGATCTTT 519923 Query 154597 GTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGT 154656 |||| | || || | |||| | ||||||| ||||| || | || | || ||||| | Sbjct 519924 GTGAATTAACCGGCTATGATAATGTATCATTTCAACCGAATTCCGGTGCTCAAGGTGAAT 519983 Query 154657 ATGCAGGACT--GTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 154714 |||| ||| | ||| ||| |||| || | | || | ||| || | | | |||| Sbjct 519984 ATGCTGGATTACGTTGT--ATCAAAGCCTATCTTGAATCACAAGGCGAAGGTTATCGAAA 520041 Query 154715 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGG 154774 ||||||||| || || | || ||||||||||||||||| |||||||| ||||| || Sbjct 520042 TGTATGTTTAATTCCGGTTTCGGCACATGGAACTAATCCAGCTAGTGCAAATATGGCCGG 520101 Query 154775 GATGAAAGTTGTA--GGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTA 154832 | |||| | ||| | | ||| | | || | || || | ||| || Sbjct 520102 TCTTCGTGTTGAACCGGTTTTAGTACTGAAAA--ACGGAAGTATCGATA---AAGCTC-- 520154 Query 154833 GAGAAGAAAGCAATCATGAATACATTT---GAACTGT---CATGTATTATGATTACATAC 154886 | |||||| | || ||| | || || | | | || ||||||||||||| Sbjct 520155 -ATTTGAAAGCTAAATTGGATAAACTTCATGATCAGATTGCCTGCCTTATGATTACATAT 520213 Query 154887 CCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATG---TAAGAT-CGTTCA 154942 ||||| ||| ||||| || || | ||||| | || || || ||| | |||| Sbjct 520214 CCATCAACATTCGGTGTTTTCGATGAAGATATTAGCGATATTTGCGATATGATACATTCA 520273 Query 154943 TGACAATGGT---GGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACT 154999 || |||| | || |||||| | ||||| ||||| | ||||||||||| ||||| Sbjct 520274 TG----TGGTTCGGCACAAGTATATTTGGATGGCGCAAACATGAATGCACAGGTTGGACT 520329 Query 155000 AGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTG 155059 ||| | || |||||| ||||| | ||| |||| |||||||||| || || Sbjct 520330 TTGTCGTCCAGGCGATTATGGTAGTGATGTTTCGCATTTAAATCTACATAAAACTTTTTG 520389 Query 155060 TATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATC 155115 |||||| ||||| ||||| || || || | ||||| || | || |||||||| Sbjct 520390 TATTCCTCATGGTGGTGGTGGACCAGGAATGGGTCCGATTGCAGTGAAAAAACATC 520445 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 153846 ATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTA 153905 || || |||||| | ||||| | | |||| | |||||||| | |||| | ||| Sbjct 519131 ATTCCAGGCAGAGTAGTAGGCTTGACCAAAGATGCTCAAGGTAATCAGGCATTACGTTTA 519190 Query 153906 GCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACA 153965 ||| |||||||| | || ||||||||| | | || |||||||| || || || ||| Sbjct 519191 GCATTACAGACTCGTGAACAGCATATCCGTCGTGATAAAGCAACATCAAATATTTGTACA 519250 Query 153966 GCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGA 154025 || || ||| | ||||||||||| || | | ||| ||||||||| || | ||| Sbjct 519251 GCGCAAGCATTATTGGCTAATATGAGTGCTATGTTTGCCATCTATCATGGTCCAAAAGGA 519310 Query 154026 CTACATGCTATAGC 154039 |||| ||||| || Sbjct 519311 CTACGAGCTATTGC 519324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579200448287040