Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1267 111 2e-19 >seq1267 Length=955761 Score = 111 bits (122), Expect = 2e-19 Identities = 493/763 (65%), Gaps = 31/763 (4%) Strand=Plus/Plus Query 159045 ATATCATAGTGAGACTGACATGATGAGATATATCTATGAGTTAGCATCAAAAGATTTCTC 159104 ||||||||| || ||| | | || | ||||| | | || | | ||||| | || Sbjct 519697 ATATCATAGCGAAACTAATCTTATTCGTTATATGAAAAAATTGGAAAACAAAGACATATC 519756 Query 159105 ATTAGTAAATGGTATGGTTCCACTTGGTAGTTGTACTATGAAACTAAACGCAGCATCAGA 159164 ||||||| || ||| | ||| | || ||||| |||||| |||| || | | || Sbjct 519757 ATTAGTACATTCAATGATACCATTAGGATCATGTACAATGAAATTAAATGCCACCACCGA 519816 Query 159165 ACTGATGCC-TGTGTCATGGGAAGAGTTTGCTAACGTGCATCCACATACACCTATGAT-A 159222 | |||| || ||| |||||| | | | | | || |||||| ||| || | || | Sbjct 519817 AATGATACCATGT-TCATGGCCAATGATAACCGATGTACATCCATATATTCC-ACCATCA 519874 Query 159223 CAGACCATGGGTTATCAAAAAATTATAGATGACTTACAGAAATGGT-TATGTGATATCAC 159281 ||| | | ||||||||| | | || |||| | | | | | | | ||||| | || Sbjct 519875 CAGGCTAAAGGTTATCAAGTACTAATCAATGAACTGGA-ACACGATCTTTGTGAATTAAC 519933 Query 159282 AGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGACT 159341 || | |||| | ||||||| ||||| || | || | || ||||| ||||| ||| | Sbjct 519934 CGGCTATGATAATGTATCATTTCAACCGAATTCCGGTGCTCAAGGTGAATATGCTGGATT 519993 Query 159342 --GTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGTTTG 159399 ||| ||| |||| || | | || | ||| || | | | ||||||||||||| Sbjct 519994 ACGTTGT--ATCAAAGCCTATCTTGAATCACAAGGCGAAGGTTATCGAAATGTATGTTTA 520051 Query 159400 ATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGTT 159459 || || | || ||||||||||||||||| || ||| ||||| || | ||| Sbjct 520052 ATTCCGGTTTCGGCACATGGAACTAATCCAGCTAGTGCAAATATGGCCGGTCTTCGTGTT 520111 Query 159460 GTA--GGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG 159517 | | ||| | | ||| | | || | || || | ||| || | ||||| Sbjct 520112 GAACCGGTTTTAGTACTGAAAA--ACGGAAGTATCGATA---AAGCTC---ATTTGAAAG 520163 Query 159518 CAATCATGAATACATTT---GAACTGT---CATGTATTATGATTACATATCCATCTACAC 159571 | | || ||| | || || | | | || ||||||||||||||||||| ||| Sbjct 520164 CTAAATTGGATAAACTTCATGATCAGATTGCCTGCCTTATGATTACATATCCATCAACAT 520223 Query 159572 ATGGTGTATTTGAAACAAACATCAGACAGATATG---TAAGATTG-TTCATGAGAATGGT 159627 ||||| || || | | || || | || || || ||| |||||| | | | Sbjct 520224 TCGGTGTTTTCGATGAAGATATTAGCGATATTTGCGATATGATACATTCATGTGGTTCG- 520282 Query 159628 GGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGT 159687 | || |||||| | ||||| ||||| | ||||||||||| || || ||| | Sbjct 520283 GCACAAGTATATTTGGATGGCGCAAACATGAATGCACAGGTTGGACTTTGTCGTCCAGGC 520342 Query 159688 GACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGA 159747 || |||||| ||||| | ||| |||| ||||||| || || |||||||| ||||| Sbjct 520343 GATTATGGTAGTGATGTTTCGCATTTAAATCTACATAAAACTTTTTGTATTCCTCATGGT 520402 Query 159748 GGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACATC 159790 ||||| || || || | ||||| |||| || |||||||| Sbjct 520403 GGTGGTGGACCAGGAATGGGTCCGATTGCAGTGAAAAAACATC 520445 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 158558 AAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACA 158617 |||||||| | |||| | |||||| |||||||| | || ||||||||| | | || | Sbjct 519168 AAGGTAATCAGGCATTACGTTTAGCATTACAGACTCGTGAACAGCATATCCGTCGTGATA 519227 Query 158618 AAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATG 158677 ||||||| || || || ||||| |||||| | ||||||||||| || | | || Sbjct 519228 AAGCAACATCAAATATTTGTACAGCGCAAGCATTATTGGCTAATATGAGTGCTATGTTTG 519287 Query 158678 CAGCATATCATGGTGCAGATGGACTACATGCTATAGC 158714 | ||||||||| || | ||||||| ||||| || Sbjct 519288 CCATCTATCATGGTCCAAAAGGACTACGAGCTATTGC 519324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588038659808160