Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1705 163 6e-35 seq1658 163 6e-35 seq1489 163 6e-35 >seq1705 Length=717327 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||||| || || ||||| ||||| ||||| |||||||||| | ||| | Sbjct 502874 AGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGG 502815 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || ||||| || || || | ||||| || ||||| || || |||||| Sbjct 502814 CCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCT 502755 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || |||||||| ||||| ||||||||| | ||| Sbjct 502754 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTG 502695 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||||||||||||||| | |||||| Sbjct 502694 ATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || ||||| || || ||||| |||||||| ||||| ||||| | |||| |||||| Sbjct 502412 AAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCT 502353 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||| ||||| || ||||| | ||||| || ||||| || || ||||||||||| Sbjct 502352 TCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCC 502293 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || || |||||||| || || || ||||| | |||| ||| Sbjct 502292 TGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTC 502233 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||| || || | |||||| Sbjct 502232 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || ||||| || |||||||| |||||||| || |||||||| |||| |||| ||||| Sbjct 502640 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAG-GTTCGGCCATC 502582 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || || || | ||| || || ||||| || || |||||||| || Sbjct 502581 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 502522 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || || || || || || || || || ||||| | |||| || Sbjct 502521 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 502462 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || ||||| | |||||| Sbjct 502461 TTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 >seq1658 Length=21299 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||||| || || ||||| ||||| ||||| |||||||||| | ||| | Sbjct 18308 AGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGG 18249 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || ||||| || || || | ||||| || ||||| || || |||||| Sbjct 18248 CCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCT 18189 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || |||||||| ||||| ||||||||| | ||| Sbjct 18188 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTG 18129 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||||||||||||||| | |||||| Sbjct 18128 ATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || ||||| ||||| ||||| ||||||||||| |||||||| | | ||||| ||||| Sbjct 17388 AATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCC 17329 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||||| || || ||||| | ||||| || ||||| || || |||||||||||| Sbjct 17328 TCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT 17269 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 || ||||| ||||| || ||||| |||||||| ||||||||| | |||| || Sbjct 17268 TGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTT 17209 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || || ||||| || || | ||||||| Sbjct 17208 TTACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || ||||| || |||||||| ||||| ||||| | ||||| ||||| Sbjct 17846 CAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATC 17787 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | || ||||| || || || | |||||||| ||||| ||||| ||||||||||| Sbjct 17786 TTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTC 17727 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || ||||| || ||||| |||||||| || || || ||||| | |||| || Sbjct 17726 CTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGT 17667 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||| || || | |||||| Sbjct 17666 TTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 129 bits (142), Expect = 1e-24 Identities = 161/216 (75%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| ||||| || |||||||| |||||||| || |||||||| |||| |||| |||| Sbjct 18075 CAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAG-GTTCGGCCAT 18017 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| | ||| ||||| || || || | ||| || || ||||| || || |||||||| | Sbjct 18016 CTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTAT 17957 Query 195047 CTTGAATTTTTTGC--TTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAAC 195104 |||||| |||| || || || || || || || || || || ||||| | |||| Sbjct 17956 CTTGAA-TTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAAT 17898 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || |||||||| || ||||| | |||||| Sbjct 17897 TGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 195037 CCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 |||||||| ||||||||||| ||| || || || || |||||||| ||||||||| Sbjct 16980 CCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCGATTGTGTCCGATGGTTCCACTTCC 16921 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | |||| || || || ||||||||||| ||||| | |||||| Sbjct 16920 AATGTAATGGTTTTACCAGTCAAAGTTTTAACGAAAATTTGCAT 16877 >seq1489 Length=23360 Score = 163 bits (180), Expect = 6e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || ||||| || || ||||| ||||| ||||| |||||||||| | ||| | Sbjct 5115 AGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGG 5174 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | || ||||| || || || | ||||| || ||||| || || |||||| Sbjct 5175 CCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCT 5234 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || |||||||| ||||| ||||||||| | ||| Sbjct 5235 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTG 5294 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || ||||||||||||||||| | |||||| Sbjct 5295 ATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || ||||| || || ||||| |||||||| ||||| ||||| | |||| |||||| Sbjct 5577 AAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCT 5636 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||| ||||| || ||||| | ||||| || ||||| || || ||||||||||| Sbjct 5637 TCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCC 5696 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || || |||||||| || || || ||||| | |||| ||| Sbjct 5697 TGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTC 5756 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || ||||| ||||| || || | |||||| Sbjct 5757 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATC 194987 || ||||| || |||||||| |||||||| || |||||||| |||| |||| ||||| Sbjct 5349 AACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAG-GTTCGGCCATC 5407 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||| ||||| || || || | ||| || || ||||| || || |||||||| || Sbjct 5408 TTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATC 5467 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||||||| || || || || || || || || || ||||| | |||| || Sbjct 5468 TTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGT 5527 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||||||| || ||||| | |||||| Sbjct 5528 TTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109457348812502