Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq206 93.3 6e-14 >seq206 Length=237414 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 104914 TGAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGG 104973 ||||| ||||| ||| | ||| ||| ||||| ||||| | ||| | ||| ||| Sbjct 142107 TGAAAAAGGTGTAAAAATCTGGGATGCAAATGGATCACGAGAATTTCTCGATAGCCTTGG 142048 Query 104974 ATTTCACTTTCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGC 105033 ||| | ||| ||||||||||| |||| ||| | ||||| ||||||||||||||| Sbjct 142047 GTTTGCCGATCGTCAAGAAGGTGATCTAGGTCCAGTATATGGTTTTCAATGGAGACATTT 141988 Query 105034 TGGAGCTCAATATATCGACTGTGATACCGACTATACCGGCCAAGGTATAGACCAATTAAG 105093 ||| || ||||| ||| || |||| |||| | |||||| | || ||||||| Sbjct 141987 TGGTGCCGAATATCGAGACAAAAATTCCGATTATAATGCTCAAGGTGTTGATCAATTAAA 141928 Query 105094 TCAAGTTATAGAAACTATAAAAAATAACCCCGGGTG-TCGAAGAATAATTATA 105145 || |||| | || || |||| || ||| || ||| |||| |||||| Sbjct 141927 ACAGCTTATCCATACGAT-CAAAACAAATCCGAATGATCGTCGAATGATTATA 141876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658389159551760