Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1705 356 3e-93 seq1703 91.5 2e-13 seq852 91.5 2e-13 seq206 91.5 2e-13 >seq1705 Length=717327 Score = 356 bits (394), Expect = 3e-93 Identities = 627/899 (70%), Gaps = 22/899 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| || || ||||||||||||| |||| ||| ||||||||||||||| || ||||| Sbjct 625434 CATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTC 625493 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 | ||| || | ||||||||| ||||||||||| | || ||||| || || | || | Sbjct 625494 CAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATA-AT-GTTTTTCACAA 625551 Query 36992 T--AATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | ||||| || | | ||| ||| | |||| || || | |||||| || | Sbjct 625552 TTCAATTCTACCAATAAACGATCTGCACAATATTCAATATAATCGGACATTAATTTTGAA 625611 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||| | | ||||| | |||||| | ||||| | | || | || ||| Sbjct 625612 TTCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTT-CAATCGATAC 625670 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATAT--TTA 37166 |||||| ||| |||| |||||| || | | ||| ||| | ||||| | | Sbjct 625671 AGCATCGATAATAATATCAACAATTCGTTGTGGTGATGGACGAT--TACGAATATGGTGA 625728 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||||||| |||||||||||||||||||| |||||||| | ||||||||||| ||| Sbjct 625729 AACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAA 625788 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || | || ||||| | || | |||||||| |||||| ||||| ||||| || ||| Sbjct 625789 AATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCA 625848 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT- 37345 ||||| || || |||||||| ||||||||||| | | |||| | |||| || |||| Sbjct 625849 GAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGT--AACTG 625906 Query 37346 -ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACA--TTCAATTGT 37402 || ||| |||| | | | ||| | || ||| || ||||| | |||| Sbjct 625907 AATCATCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTAC 625966 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 | || || || || ||||| | || ||| || ||| | || ||| |||| || | Sbjct 625967 GT--ATGGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAA 626024 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 ||| ||||||||| || |||| ||||||||| || || ||||| ||||||||||| | Sbjct 626025 TAATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACG 626084 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | || ||| ||||| || ||| | | || | |||||||| || || || Sbjct 626085 TGCTTCTGGTATTTGTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACC 626144 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGAT-- 37640 ||| || || ||||| || || | |||| | | || |||||| |||||| || || Sbjct 626145 ATCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCAT--TTGCATTC 626202 Query 37641 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTT 37700 |||| ||||||| |||||| || ||| ||||| ||||| ||||| || | Sbjct 626203 AATTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGAT 626262 Query 37701 GCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || || ||||||||| ||||||| |||| || ||| |||||||| | ||||| Sbjct 626263 GCTTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAA 626321 >seq1703 Length=20630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 ||||| ||||||||||||||| || |||||| ||| || | || || || ||||| Sbjct 15214 GGTGTATTACATACAAAATTTATTATTGTTGATCGAAAAGATTTCTACATCGGTAGTGCC 15273 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAAT 153407 |||||||||||| | ||| |||| || || |||||||| || || | ||| | |||||| Sbjct 15274 AATATGGATTGGCGTTCATTAACACATGTCAAAGAATTGGGAATCATAATACAAAATAAT 15333 >seq852 Length=67183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 ||||| ||||||||||||||| || |||||| ||| || | || || || ||||| Sbjct 6870 GGTGTATTACATACAAAATTTATTATTGTTGATCGAAAAGATTTCTACATCGGTAGTGCC 6811 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAAT 153407 |||||||||||| | ||| |||| || || |||||||| || || | ||| | |||||| Sbjct 6810 AATATGGATTGGCGTTCATTAACACATGTCAAAGAATTGGGAATCATAATACAAAATAAT 6751 >seq206 Length=237414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 153288 GGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCT 153347 ||||| ||||||||||||||| || |||||| ||| || | || || || ||||| Sbjct 9161 GGTGTATTACATACAAAATTTATTATTGTTGATCGAAAAGATTTCTACATCGGTAGTGCC 9220 Query 153348 AATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAAT 153407 |||||||||||| | ||| |||| || || |||||||| || || | ||| | |||||| Sbjct 9221 AATATGGATTGGCGTTCATTAACACATGTCAAAGAATTGGGAATCATAATACAAAATAAT 9280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592304168844240