Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1179 201 6e-47 seq1123 181 5e-41 >seq1179 Length=350002 Score = 201 bits (222), Expect = 6e-47 Identities = 283/395 (72%), Gaps = 2/395 (1%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 |||||| ||||| || ||||||| |||||| |||| || | || | | ||||| Sbjct 62041 CATAAACAAATCCGGTATCCACAATGCATAGAATAGGTCACGTGCACGTAGCTCTTCGGA 61982 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||||||||||||||| || || |||||||||||| |||||||| || ||||| Sbjct 61981 ACCAGTATTCTTTTTTAGATCCAAAAAGGCAAAAATATCTGCATGCCATGGCTCCAAATA 61922 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||||||||| |||| | |||||| ||||||||||| || || | |||||| | ||| Sbjct 61921 GATAGCAAATGCACCTGGACGTTTTCCACCACCTTGATCCACATAACGTGCAGTGTTATT 61862 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGG 26171 ||| || |||||||| ||||| ||| | ||||| || || || | | ||| | || Sbjct 61861 GAATACACGTAACATTGGTACTAAACCATTGGAAAAACCATTCGTACCAGCAATATATGA 61802 Query 26172 ATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAG 26231 | | ||| || | |||| ||| ||| || || || ||||| || |||| |||||| Sbjct 61801 ACCATGT-GAACGAATACAATGAACATTAAGGCCAATACCACCGGCAGATTTCGAAATAA 61743 Query 26232 CTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATA 26291 |||||| | | | |||||| | || |||| ||||||||| | |||| |||| Sbjct 61742 TTGCACATTGTTTCAATGTATCATAGATGCCTTCAATGCTATCATCGCCCATTGTCAATA 61683 Query 26292 AAAAACAAGAAGATAATTGCGAATGAGTTGTTCCT 26326 | |||||||| || | ||| | | | | ||| ||| Sbjct 61682 AGAAACAAGATGACATTTGTGGACGTGGTGTACCT 61648 Score = 91.5 bits (100), Expect = 7e-14 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 25022 CCAGACAAAACTCTTCTTATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTT 25081 ||||||| || | ||| | | | |||||| || |||||||||| |||||||||| Sbjct 62922 CCAGACATTACACGTCTAGTGTAAATGTTTGATGTATATGGTTCAAATGATTCATTATTG 62863 Query 25082 CCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAA 25141 ||||| ||||| | |||||||||||||||||| ||| | | || ||||| | | Sbjct 62862 CCTAAAATTTGTGCTGTAGATGCTGTTGGCATTGGTGCAACAAGTAAACTATTTCGTATA 62803 Query 25142 CCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 |||| || | |||| | | ||| |||| || |||||| Sbjct 62802 CCATTTTGAGCAATTTTTGCTTTCAATTCATTCCAATC 62765 >seq1123 Length=366939 Score = 181 bits (200), Expect = 5e-41 Identities = 409/611 (67%), Gaps = 19/611 (3%) Strand=Plus/Plus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| |||||||| |||||||| | |||||||||||||| | || | | |||||| Sbjct 24379 CATGAATAAATCAGGAATCCAAAGGGCATAAAATAAATCACGTGCACGTAATTCTTCGGA 24438 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 |||| ||| || |||| || |||||||| ||||| || ||||||||||||| ||| Sbjct 24439 TCCGGTATTTTTACGAAGATTTATAAAATCAAAGATATCCGAATGCCATGGTTCTAGATA 24498 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| ||||| || | ||| ||||||||||| || |||| || || | ||| Sbjct 24499 GATGGCAAATGCTCCAGGACGTTTGTTGCCACCTTGATCAACATATCGAGCCGTATTATT 24558 Query 26113 GAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGA 26172 | | || ||||| ||||| || ||| | |||||||| || || | ||| | Sbjct 24559 GTATACACGTAACATAGGAACCAAGCCATTAGAAAATCCATTCGTACCGGCAATATAACT 24618 Query 26173 TCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGC 26232 || | |||| ||| ||| ||| || ||| || || ||||| ||||||||||| Sbjct 24619 ACCAGAAGATCGGATACAATGAACATTAAGACCAATACCGCCAGCTGATTTTGAAATAAT 24678 Query 26233 TGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAA 26292 ||||||| | || ||||| | || |||| || |||||| ||| || || ||| Sbjct 24679 GGCACAATTTTTAAGGGTATCATATATACCTTCAATACTATCA----TCACTCATAGTAA 24734 Query 26293 ----AAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAG 26348 |||||| || |||||||| | | |||| || | |||||| ||||| |||| | Sbjct 24735 GCAGAAAACATGATGATAATTGTGGCCGTTTTGTGCCGGCATTAAACAATGTAGGTGATG 24794 Query 26349 CATGAGTA---TAATATCCTTCACTCAAAGCTGTATAAGTTTCAAGAACTTCATCGATAT 26405 |||| ||| ||| | | | ||| |||| ||||||| | ||||||||| Sbjct 24795 CATGTGTAAACCAATTTTCCGAGATTAAA---TTATACGTTTCAATGGCGGCATCGATAT 24851 Query 26406 TGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACAT 26465 | | | || ||||||| | | | |||||| ||| |||||||| | || | Sbjct 24852 CATCACCATGAATACCAATAGCACAACGCATCAACATATGTTGGGGTCGTTCGACAACCT 24911 Query 26466 TATTTTCCGC-ATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCA 26524 | | ||| | | | | ||||||| | | ||| ||||| || |||||||||| Sbjct 24912 TGT----CGCAAATTTTGAGCAAATAACTTCGATATAATGTTTTGAAACCAAAATAATTG 24967 Query 26525 TGATTGAAATC 26535 | ||| ||||| Sbjct 24968 TAATTAAAATC 24978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253034738823950