Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq1267 132 6e-26 >seq1267 Length=955761 Score = 132 bits (146), Expect = 6e-26 Identities = 470/717 (66%), Gaps = 37/717 (5%) Strand=Plus/Minus Query 138172 GATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGA 138231 |||||||| || |||| ||||| | || || || ||||| ||||| |||||||| | Sbjct 520445 GATGTTTTTTCACTGCAATCGGACCCATTCCTGGTCCACCACCACCATGAGGAATACAAA 520386 Query 138232 ATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGAC 138291 | || ||||||| ||||| ||| | ||||| |||||| || | ||| || | Sbjct 520385 AAGTTTTATGTAGATTTAAATGCGAAACATCACTACCATAATCGCCTGGACGACAAAGTC 520326 Query 138292 CTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACC---ACCATTGTCATGAA 138348 | ||||||||||| | ||||| ||||| | |||||| || | |||| |||||| Sbjct 520325 CAACCTGTGCATTCATGTTTGCGCCATCCAAATATACTTGTGCCGAACCA----CATGAA 520270 Query 138349 CG-ATCTTA---CATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATAT 138404 | ||| || || || | || || | | || || ||||| || ||||||||| Sbjct 520269 TGTATCATATCGCAAATATCGCTAATATCTTCATCGAAAACACCGAATGTTGATGGATAT 520210 Query 138405 GTAATCATAATACATGAGA---GTTC---AAATGTATTCATGATTGCTTTCTTCTCTAGA 138458 |||||||||| || | | | || || | ||| || | |||||| | || Sbjct 520209 GTAATCATAAGGCAGGCAATCTGATCATGAAGTTTATCCAATTTAGCTTTCAAAT---GA 520153 Query 138459 TCTTTGATGTCTATGTTGCCATCATCATCACACTTGACACC--TACAACTTTCATTCCTG 138516 ||| | || || | || | | ||| | | ||| | |||| | || | Sbjct 520152 GCTT---TATCGATACTTCCGT--TTTTCAGTACTAAAACCGGTTCAACACGAAGACCGG 520098 Query 138517 CCATGACTGCACTAGCAGGATTAGTTCCATGTGCTGACTCTGGTATCAGACATACATTTC 138576 |||| ||||||||| ||||||||||||||||| || | || || | ||||||||||| Sbjct 520097 CCATATTTGCACTAGCTGGATTAGTTCCATGTGCCGAAACCGGAATTAAACATACATTTC 520038 Query 138577 TTTTATCATCTCCTGATCCTTGATGATATGCTTGGATTGCTAAC--AGTCCTGCATACTC 138634 | | | || ||| | || | |||| |||| ||| ||| | ||| ||||| || Sbjct 520037 GATAACCTTCGCCTTGTGATTCAAGATAGGCTTTGAT--ACAACGTAATCCAGCATATTC 519980 Query 138635 ACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAATCAAAACCTGTGATATCACATA- 138693 ||| || | || | || ||||| ||||||| | |||| | || || | ||||| | Sbjct 519979 ACCTTGAGCACCGGAATTCGGTTGAAATGATACATTATCATAGCCGGTTAATTCACAAAG 519920 Query 138694 ACCATTTCTGTAAGTCATCTATTATCTTTTGATAACCCATGGTCTGT-ATCATAGGTGTA 138752 | | | | | | |||| |||| ||||||||| | | |||| || | || || Sbjct 519919 ATCGTGT-TCCAGTTCATTGATTAGTACTTGATAACCTTTAGCCTGTGATGGT-GGAATA 519862 Query 138753 TGTGGATGCACGTTGGCAAATTCTTCCCATGACACA-GGCATCAGTTCTGCTGCTGCATT 138811 | |||||| || | || | | |||||| ||| || |||| ||| | | ||||| Sbjct 519861 TATGGATGTACATCGGTTATCATTGGCCATGA-ACATGGTATCATTTCGGTGGTGGCATT 519803 Query 138812 TAGTTTCATTGTGCAACTACCAAGTGGAACCATACCATTTACTAATGAGAAATCTTT 138868 || ||||||||| || || | ||| | ||| || ||||||||| | ||||| Sbjct 519802 TAATTTCATTGTACATGATCCTAATGGTATCATTGAATGTACTAATGATATGTCTTT 519746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578986052859120