Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1631 167 3e-36 seq1399 161 1e-34 >seq1631 Length=21602 Score = 167 bits (184), Expect = 3e-36 Identities = 277/398 (70%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 47749 GCAGATTCCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCA 47808 |||||||| ||||| | ||| || |||| | | || || || ||||||||||| Sbjct 13157 GCAGATTCG---ACAAATTCACGAACTGAATGTGCTTCACCAGTTGCGATAACAAAATCT 13213 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 || || | ||| ||||| | ||||| |||||| || || |||||||| | || || ||| Sbjct 13214 TCTGGATTTTCCTGTTGTAACATTAGCCACATTGCTTCCACATAATCACGTGCGTGGCCC 13273 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATT 47928 || || || || ||| ||||| || | | | | | |||||| || |||| | Sbjct 13274 CAATCTCGTTTTGAATCCAGATTACCCAATTCAATATATTCTTGCCGGT-TTAGGAGAAT 13332 Query 47929 GCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCA 47988 | || | | |||||| |||||||| ||||| |||||||| |||| || |||||| Sbjct 13333 TTTCGCAACACACGTGTAATTTTACGAGTGACAAATGTTTCACCGCGTCGAGGTGATTCA 13392 Query 47989 TGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACT 48048 ||||| || || |||||| | |||| ||||| | || | ||||||||| || || Sbjct 13393 TGATTGAATAGTATACCATTGACGGCAAACATTTCATAAGCTTCACGATAATTGACAACA 13452 Query 48049 ATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTC 48108 ||||| || | | |||||| ||||| || || || ||||||||||| ||||| || Sbjct 13453 ATCCAATAAGCGAATGATTTTGCCACACCGTATGGTGATCGTGGATAGAATGGTGTTGTT 13512 Query 48109 TCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 || || || ||||| || || ||||| | ||| Sbjct 13513 TCACGTTGAGGCACTTCTTGTACTTTGCCATACAATTC 13550 >seq1399 Length=306096 Score = 161 bits (178), Expect = 1e-34 Identities = 277/399 (69%), Gaps = 5/399 (1%) Strand=Plus/Minus Query 47749 GCAGATTCCTCAACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCA 47808 |||||||| ||||| | ||| || |||| | | || || || ||||||||||| Sbjct 139726 GCAGATTCG---ACAAATTCACGAACTGAATGTGCTTCACCAGTTGCGATAACAAAATCT 139670 Query 47809 TCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCC 47868 || || | ||| ||||| | ||||| |||||| || || |||||||| | || || ||| Sbjct 139669 TCTGGATTTTCCTGTTGTAACATTAGCCACATTGCTTCCACATAATCACGTGCGTGGCCC 139610 Query 47869 CAGTCACGAAGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATT 47928 || || | || ||| ||||| || | | | | | |||||| || |||| | Sbjct 139609 CAATCTCTTTTTGAATCCAGATTACCCAATTCAATATATTCTTGCCGGT-TTAGGAGAAT 139551 Query 47929 GCTTTTAATGCT-CTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTC 47987 | || | | |||||| |||||||| ||||| |||||||| |||| || ||||| Sbjct 139550 TTTCGCAACACCGCGTGTAATTTTACGAGTGACAAATGTTTCACCGCGTCGAGGTGATTC 139491 Query 47988 ATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTAC 48047 |||||| ||||| |||||| | |||| ||||| | || | ||||||||| || || Sbjct 139490 ATGATTGAAAAGTATACCATTGACGGCAAACATTTCATAAGCTTCACGATAATTGACAAC 139431 Query 48048 TATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGT 48107 ||||| || | | |||||| ||||| || || || ||||||||||| ||||| || Sbjct 139430 AATCCAATAAGCGAATGATTTTGCCACACCGTATGGTGATCGTGGATAGAATGGTGTTGT 139371 Query 48108 CTCTGTCTGTGGAGTCTCTTGCACCTTACCATAAAGTTC 48146 || || || ||||| || || ||||| | ||| Sbjct 139370 TTCACGTTGAGGCACTTCTTGTACTTTGCCATACAATTC 139332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665480208331920