Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1179 205 1e-47 seq1123 172 7e-38 >seq1179 Length=350002 Score = 205 bits (226), Expect = 1e-47 Identities = 470/700 (67%), Gaps = 16/700 (2%) Strand=Plus/Plus Query 75897 CACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTA 75956 |||| | || ||||| || ||||| ||| | || || ||| |||||| || | Sbjct 62211 CACAAATTGAAACTGGTACTCCATACATGGTATATAAAGATCATTGTAATCGTAAATCAA 62270 Query 75957 ACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACA 76016 | ||| | ||||||||||| ||||| | ||||||||||| ||||||||| | || || Sbjct 62271 ATCAACAAAATTTGGGAACCATCAAATGTTCAAATCTTTGTACGGAAATTGTTGAATATT 62330 Query 76017 CAGATAAG--GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGT 76074 | || || ||||| | || ||||| |||||||| ||||| | | ||| | ||| Sbjct 62331 C--ATCAGCTGATGAAATTGCCGTTTGTAATTTGGCTTCAATTTCATTGCCACGTTTTGT 62388 Query 76075 CAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTAC 76134 | || | || | || ||||||||||| ||||| | ||||| || | | || Sbjct 62389 CGATCCAAAGCTTTTTACATTTGATTATGATAAACTCAAAGAAATTGTTAAAGTAATGAC 62448 Query 76135 CAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTG--CGCGAAA- 76191 |||||| | ||| | | || || || ||||||||||| | || | |||||| Sbjct 62449 AAAAAATTTGAACAAAATTATCGATAGTAATTTTTATCCATT----ACCGGAAGCGAAAC 62504 Query 76192 -GTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 || ||| | || || |||| ||||| | ||||| |||||| | || |||| ||| | Sbjct 62505 GTTCGAATCTACGTCATCGACCGATTGGAATTGGTGTACAAGGTTTAGCCGATGCATTCA 62564 Query 76251 TTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTG 76310 || || || ||| ||| ||||| || | |||||| || || |||| Sbjct 62565 ACTTAATGCGTTATCCATATGAAAGTCTCGAAGCTAAACAAATGAATATTCAAATATTTG 62624 Query 76311 AAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 |||| || ||| | | | |||| || |||||||||||||||||| || | | Sbjct 62625 AAACAATTTATTATGGTGCATTGGAAGCAAGTTGTGAATTGGCTGAAAAATTTGGCCCAT 62684 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAG 76430 |||| |||| ||| || || || | || |||| | || || | |||||||| |||| Sbjct 62685 ATGAAACATATGAAGGATCACCAGTATCGAAAGGTATTCTACAATATGATATGT-GGAAC 62743 Query 76431 GTGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGG 76488 | ||||| || | | | || ||| ||| | || | | || | || || Sbjct 62744 CGCACACCAA-CTGATCTTTGGGATTGGAATGAATTGAAAGCAAAAATTGCTCAAAATGG 62802 Query 76489 TCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGG 76548 | | || || ||| | | | ||||||||||||||||| || || |||||||| || || Sbjct 62803 TATACGAAATAGTTTACTTGTTGCACCAATGCCAACAGCATCTACAGCACAAATTTTAGG 62862 Query 76549 TAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 |||||||||| ||||||||||| ||| ||||||| ||| Sbjct 62863 CAATAATGAATCATTTGAACCATATACATCAAACATTTAC 62902 >seq1123 Length=366939 Score = 172 bits (190), Expect = 7e-38 Identities = 466/704 (66%), Gaps = 18/704 (3%) Strand=Plus/Minus Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 ||||||| | || ||||| ||||| |||||| |||| |||||| |||||| || Sbjct 24212 AATCACAAATCGAAACTGGCACACCGTATATGGTTTATAAGGATCATTGTAATCGTAAAT 24153 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 || ||| | ||| | || |||||||| | || |||||||| ||||| ||| | || | Sbjct 24152 CAAATCAACAAAATCTTGGTACAATCAAATGTTCTAATCTTTGTACGGAGATTGTGGAAT 24093 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 | || ||| ||||| | ||||| || ||||| || || || || | || | || Sbjct 24092 ATTCATCTAAAGATGAAATTGCTGTCTGTAATTTAGCCTCGATTGCTTTGAACAAATTTG 24033 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCAC-----AAAGAT 76128 | || | | | ||| | | ||||| | ||||| | |||||| |||| | Sbjct 24032 TTGATCATAAAAATCGAATCTATGATTTTAAAAAATT----GAAATCGATTGTTAAAG-T 23978 Query 76129 TGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCG 76188 ||| || ||||||||| ||| ||||| | || ||||||||| | || || Sbjct 23977 TGTCACTCGTAATCTAAACAAAGTTATTGATGTTACTTATTATCCCGTACCGGAAGCACG 23918 Query 76189 AAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 | | || ||| | || || |||| || ||| | |||||||||||| | || |||| ||| Sbjct 23917 ATATTCGAATCTTCGTCATCGACCGATAGGTATCGGTGTTCAAGGTTTGGCCGATGCATT 23858 Query 76249 TATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTT 76308 ||| | || || ||| || || ||||| | | ||| || || || Sbjct 23857 CATTCTAATGCGTTATCCATACGAAAGTGAAGAAGCTCGATTGCTCAATATTCAGATTTT 23798 Query 76309 TGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTC 76368 |||||| || ||| | | | | || || |||||||||||||||||| | ||| | Sbjct 23797 TGAAACAATTTATTATGGTGCATTAGAAGCAAGTTGTGAATTGGCTGAACGAAATGGTCC 23738 Query 76369 CTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGA 76428 ||||| || | ||| || || || | || || | | || |||||||| |||||| | Sbjct 23737 ATATGAAACGTATGAAGGATCACCAGTATCTAAAAGTATTCTACAGTTTGACATGTGGAA 23678 Query 76429 AGGTGAAACCAAGCTCAACTACG-ACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAA 76485 || |||||| || | | | ||| | | | | || | || || ||| | | Sbjct 23677 TCGT-CAACCAACATCTCTTTGGAATTGGAACGATTTGAAAGCTCGAATTGCAA--AACA 23621 Query 76486 GGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCT 76544 ||| | || || ||| | | | || |||||||| ||||| || || ||||||| ||| Sbjct 23620 TGGTATACGAAATAGTTTGCTTGTAGCTCCAATGCCTACAGCTTCGACAGCACAAATTCT 23561 Query 76545 TGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 |||| || ||||||| ||||||||||| |||| || || ||| Sbjct 23560 TGGG-AACAATGAATCTTTTGAACCATATACAAGTAATATATAC 23518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596556878153280