Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1705 242 7e-59 seq1658 172 1e-37 seq1489 167 5e-36 >seq1705 Length=717327 Score = 242 bits (268), Expect = 7e-59 Identities = 569/855 (67%), Gaps = 15/855 (2%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 |||| ||||| ||| | |||||| ||||||||||| || ||||||| |||||| | Sbjct 625490 CTTCCAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCAC 625549 Query 49633 CTATCAATACATATAATAATCTATCGGCTACAA-ATTCAACATATTGTGACATTAATTCA 49691 ||||| | ||||| | ||| || |||| |||||| ||| | |||||||||| Sbjct 625550 AATTCAATTCTACCAATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTT 625608 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttc 49750 ||||||| || | ||| || |||||||||||| |||| || ||| | ||| || Sbjct 625609 GAATTCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAA-TTCCTGTTCAATCGA 625667 Query 49751 tacagcttgtttaattatcataattatattattttt--tgataatttatatttaatatga 49808 |||||| | |||| || || | | ||| || | |||| || |||||| Sbjct 625668 TACAGCATCGATAATAAT-ATCAACA-ATTCGTTGTGGTGATGGACGATTACGAATATGG 625725 Query 49809 ttcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCA 49868 | | | | ||| |||||||||||| |||||| || || || | || || |||||| Sbjct 625726 TG---AAACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCA 625782 Query 49869 TTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA 49928 || ||| || | || ||||| | || | |||||||||||||| |||| ||||| Sbjct 625783 TTCGAAAATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAAT 625842 Query 49929 CTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATT 49988 || |||||| || || || || || |||||||| || | | | | | || | Sbjct 625843 GAACCAGAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTA 625902 Query 49989 AATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATA 50048 | | |||||| ||||| ||||||||| | |||||||||| | | |||||| | Sbjct 625903 ACTGAATCATCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAA 625962 Query 50049 TTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATT 50108 || ||| || || |||| || || |||| || Sbjct 625963 TTACGTATGGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATC 626022 Query 50109 AATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGT 50168 ||||| ||||||||||| ||||| ||| ||| || || |||||||| |||||| Sbjct 626023 AATAATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAA 626082 Query 50169 CTTGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATA 50228 | |||||||| || || || || || ||||| | | ||| ||| |||||| Sbjct 626083 CGTGCTTCTGGTATTTGTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATA 626142 Query 50229 CCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTT 50288 ||||| ||| || || ||||| || || | | |||| |||||||||||||| | || Sbjct 626143 CCATCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTC 626202 Query 50289 AAATTTTCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGAT 50348 || | | |||| ||| ||| || ||| |||||||| | |||||| |||||| Sbjct 626203 AATTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGAT 626262 Query 50349 GCTACGGATTTTTTATACATTTGAT--ATATATCAAAATGTTCAATGGGAAATAGTACAT 50406 ||| | | ||||||||||| |||| | || ||| || || ||| ||||| | ||| Sbjct 626263 GCTTCAGCTTTTTTATACA--TGATCCAAATGTCATGATATTGAATTGGAAACAAAACAA 626320 Query 50407 ATCGTTTAGTATTTT 50421 | || || | ||||| Sbjct 626321 AACGATTTGGATTTT 626335 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | ||||| ||||| ||| ||||||||| Sbjct 502202 ATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA 502143 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || | ||||||||||||||| || |||| || ||||| ||| Sbjct 502142 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 502083 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| || | || || | ||| Sbjct 502082 GGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 502023 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || ||||||||||| ||||| | ||| || ||||| Sbjct 502022 ACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| |||||||| | ||| | || | || || ||| || ||||| Sbjct 501974 ATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 501915 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| |||||||| || ||||||||||| |||| || || || ||| Sbjct 501914 GACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGT 501855 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| |||| || || | ||| Sbjct 501854 GGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCC 501795 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||||||||||||||||| |||||||| | || || |||||| Sbjct 501794 ACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| || | ||| | ||| | ||||| ||| || |||||| Sbjct 502658 ATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 502599 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| |||| ||||| |||||||| ||||| || |||| ||| ||||| ||| Sbjct 502598 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 502539 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| ||| ||||| || | |||||| | || Sbjct 502538 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCA 502479 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| ||||||||||| || || || | || || ||||| Sbjct 502478 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||||| || | ||| | || | ||||| ||||||||||||| Sbjct 502430 ATACCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCA 502371 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| |||| ||||| |||||||| |||||||| || | || ||||| ||| Sbjct 502370 CTCAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGT 502311 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || |||||| ||| ||||| || | ||| || | || Sbjct 502310 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCG 502251 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || || || |||||||| | ||| || ||||| Sbjct 502250 ACTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 136 bits (150), Expect = 8e-27 Identities = 176/244 (72%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 192293 TTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352 |||||||||| ||||| | ||| || | ||| | ||| | || | ||||| Sbjct 502893 TTTTTAGTTT-------CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCT 502841 Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 || || ||||| || || || || |||| |||||||||||||| ||||| || || | Sbjct 502840 GAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACC 502781 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 || ||||| ||||| || |||||||| ||||| |||||| ||||||||| || | Sbjct 502780 GTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGG 502721 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 ||| || | ||| ||||| | || || ||||||||||| || ||||| | ||||| | Sbjct 502720 TATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTT 502661 Query 192533 GCAT 192536 |||| Sbjct 502660 GCAT 502657 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | ||| ||||| || || | ||||| || |||||||| Sbjct 501446 ATACCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCG 501387 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||||||||| ||||||||||| ||||| || ||||| ||| Sbjct 501386 GACAATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGT 501327 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 501326 GGAATACCT 501318 Score = 96.9 bits (106), Expect = 7e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||||| ||||| ||||| || |||| || ||| || ||||||||||| Sbjct 501746 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGA-ATATTATAATC 501688 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || ||||| |||| || |||||||| ||||||||||| || | || ||||| || Sbjct 501687 GGACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGG 501628 Query 192426 TGGTATTCCT 192435 ||| || ||| Sbjct 501627 TGGAATACCT 501618 >seq1658 Length=21299 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | ||| | ||||| ||||| ||||||||||||| Sbjct 17863 ATACCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCA 17804 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||||| |||| |||||||||||||| ||||| || || | |||||||| ||| Sbjct 17803 CTCAATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGT 17744 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || |||||| ||| || || || | |||||| | || Sbjct 17743 GGAATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCG 17684 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||||||| || || |||||||| | ||| || ||||| Sbjct 17683 ACTTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| |||||||| | ||| | || | ||||| || || |||||| Sbjct 17406 ATACCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 17347 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| |||||||| || || |||||||| || | || ||||| ||| Sbjct 17346 GACAAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGT 17287 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| |||||| ||| ||||| |||| || || | ||| Sbjct 17286 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCC 17227 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | |||||||||||||||||||| ||||| | ||| || |||||| Sbjct 17226 ACTTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 156 bits (172), Expect = 8e-33 Identities = 174/231 (75%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | ||| | ||| | ||||| ||| || |||||| Sbjct 18092 ATACCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 18033 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| |||| ||||| |||||||| ||||| || |||| ||| ||||| ||| Sbjct 18032 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 17973 Query 192427 GGTATTCCTTCTTTATCTTGTATTTT-ATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || ||||||||||||||||| ||||| |||| ||||| || | |||||| | || Sbjct 17972 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTC 17913 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| ||||||||||| || || || | ||||| ||||| Sbjct 17912 AACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | |||||||| || | ||| | ||| | || || ||| ||||| ||| Sbjct 17635 ATGCCACCACGTAGACGTAAGACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCA 17576 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || | ||||||||||||||| || |||| || ||||| ||| Sbjct 17575 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 17516 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| ||||| ||| ||||| || | || || | ||| Sbjct 17515 GGAATACCCTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 17456 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || ||||| || ||||||||||| ||||| | ||| || || Sbjct 17455 ACTTCCAGTGTAATAGTCTTACCAGTTAAGGTTTTGACAAAGATTTG 17409 Score = 136 bits (150), Expect = 8e-27 Identities = 176/244 (72%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 192293 TTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352 |||||||||| ||||| | ||| || | ||| | ||| | || | ||||| Sbjct 18327 TTTTTAGTTT-------CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCT 18275 Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 || || ||||| || || || || |||| |||||||||||||| ||||| || || | Sbjct 18274 GAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACC 18215 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 || ||||| ||||| || |||||||| ||||| |||||| ||||||||| || | Sbjct 18214 GTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGG 18155 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 ||| || | ||| ||||| | || || ||||||||||| || ||||| | ||||| | Sbjct 18154 TATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTT 18095 Query 192533 GCAT 192536 |||| Sbjct 18094 GCAT 18091 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | |||||| | ||| ||||| || || | ||||| || |||||||| Sbjct 16878 ATACCTCCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCG 16819 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||||||||| ||||||||||| |||| || ||||| ||| Sbjct 16818 GACAATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCGTTGCTGATCTGGT 16759 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 16758 GGAATACCT 16750 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| ||||| ||||| || |||| ||||| ||||| ||||| Sbjct 17178 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCG 17119 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| || |||||||| ||||||||||| || | || ||||| ||| Sbjct 17118 GACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGT 17059 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 17058 GGAATACCT 17050 >seq1489 Length=23360 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| || || | ||| | ||||| ||||| ||| ||||||||| Sbjct 5787 ATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA 5846 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| || |||| || | ||||||||||||||| || |||| || ||||| ||| Sbjct 5847 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 5906 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| ||||| ||| ||||| || | || || | ||| Sbjct 5907 GGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 5966 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| || ||||||||||| ||||| | ||| || ||||| Sbjct 5967 ACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| |||||||| | ||| | || | || || ||| || ||||| Sbjct 6015 ATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 6074 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| |||||||| || ||||||||||| |||| || || || ||| Sbjct 6075 GACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGT 6134 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| |||| || || | ||| Sbjct 6135 GGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCC 6194 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||||||||||||||||| |||||||| | || || |||||| Sbjct 6195 ACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||||| || | ||| | ||| | ||||| ||| || |||||| Sbjct 5331 ATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 5390 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| |||| ||||| |||||||| ||||| || |||| ||| ||||| ||| Sbjct 5391 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 5450 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| ||||| ||| ||||| || | |||||| | || Sbjct 5451 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCA 5510 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||||| ||||||||||| || || || | || || ||||| Sbjct 5511 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||||| || | ||| | || | ||||| ||||||||||||| Sbjct 5559 ATACCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCA 5618 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||| |||| ||||| |||||||| |||||||| || | || ||||| ||| Sbjct 5619 CTCAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGT 5678 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || |||||| ||| ||||| || | ||| || | || Sbjct 5679 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCG 5738 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || || || |||||||| | ||| || ||||| Sbjct 5739 ACTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 136 bits (150), Expect = 8e-27 Identities = 176/244 (72%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 192293 TTTTTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAG 192352 |||||||||| ||||| | ||| || | ||| | ||| | || | ||||| Sbjct 5096 TTTTTAGTTT-------CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCT 5148 Query 192353 AGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC 192412 || || ||||| || || || || |||| |||||||||||||| ||||| || || | Sbjct 5149 GAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACC 5208 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 192472 || ||||| ||||| || |||||||| ||||| |||||| ||||||||| || | Sbjct 5209 GTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGG 5268 Query 192473 AATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCT 192532 ||| || | ||| ||||| | || || ||||||||||| || ||||| | ||||| | Sbjct 5269 TATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTT 5328 Query 192533 GCAT 192536 |||| Sbjct 5329 GCAT 5332 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| | ||| ||||| || || | ||||| || |||||||| Sbjct 6543 ATACCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCG 6602 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||||||||| ||||||||||| ||||| || ||||| ||| Sbjct 6603 GACAATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGT 6662 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 6663 GGAATACCT 6671 Score = 96.9 bits (106), Expect = 7e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| | ||||| ||||| ||||| || |||| || ||| || ||||||||||| Sbjct 6243 ATTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGA-ATATTATAATC 6301 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || ||||| |||| || |||||||| ||||||||||| || | || ||||| || Sbjct 6302 GGACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGG 6361 Query 192426 TGGTATTCCT 192435 ||| || ||| Sbjct 6362 TGGAATACCT 6371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984458481113100