Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1705 233 3e-56 seq1489 168 1e-36 seq1658 150 3e-31 >seq1705 Length=717327 Score = 233 bits (258), Expect = 3e-56 Identities = 590/899 (66%), Gaps = 15/899 (2%) Strand=Plus/Plus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| ||||| | ||| |||||||||||| |||| ||| ||||| ||||| ||| Sbjct 625446 TTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAATGAAATTTG 625505 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAA 38950 | |||||| ||||||||||| || ||||||| |||||| | ||||| | || Sbjct 625506 TTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATTCAATTCTACCAA 625565 Query 38951 TAATCTATCGGCCACAA-ATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 ||| | ||| || |||| |||||| ||| | ||||||||| ||||||| || | | Sbjct 625566 TAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAATTCATGCCAATCA 625624 Query 39010 ATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || || |||||||||||| |||| || ||| | ||| || |||||| | |||| Sbjct 625625 ATGAAACTGGTAATGCATCGGTCAAGAA-TTCCTGTTCAATCGATACAGCATCGATAATA 625683 Query 39069 atcataattatattattttt--tgataatttatatttaatatgattcgcatataGTAAAC 39126 || || | | ||| || | |||| || |||||| | | | | ||| | Sbjct 625684 AT-ATCAACA-ATTCGTTGTGGTGATGGACGATTACGAATATGGTG---AAACAATAAGC 625738 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 |||||||||| |||||| ||||| || | || || |||||||| ||| || | | Sbjct 625739 ATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAATGTAAGAC 625798 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||| | || | |||||||||||||| |||| ||||| || |||||| || | Sbjct 625799 CAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAAAAAAAGA 625858 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 | || || || |||||||| || | | | | | || | | | |||||| Sbjct 625859 TTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCATCCTGGG 625918 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 ||||| ||| ||||| | |||||||||| | | |||||| ||| ||| || || | Sbjct 625919 TCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACGTATGGCATTGA 625978 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426 ||| || |||||||||| Sbjct 625979 ATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAATAATGAATACATTT 626038 Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACT 39486 | ||||| ||| ||| || || |||||||| |||||| | |||||||| | Sbjct 626039 CTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTCTGGTATTT 626098 Query 39487 GAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGA 39546 | || || || || ||||| | | ||| ||| ||||||||||| ||| || | Sbjct 626099 GTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACCATCGCTTGCAGCAA 626158 Query 39547 AGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATT 39606 | ||||| || |||| | |||| |||||||||||||| | || || | | |||| Sbjct 626159 AAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTCAATTGATTCCAATGGG 626218 Query 39607 CAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTAT 39666 ||| ||| || ||| |||||||| | |||||| || |||||| | | |||||||| Sbjct 626219 CAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGCTTCAGCTTTTTTAT 626278 Query 39667 ACATTTGAT--ATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTATTTT 39723 ||| |||| | || ||| || || ||| ||||| || ||| | || || | ||||| Sbjct 626279 ACA--TGATCCAAATGTCATGATATTGAATTGGAAACAAAACAAAACGATTTGGATTTT 626335 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||||||||| | ||| | || | || || || || ||||| Sbjct 501974 ATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 501915 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| | || |||||||| || |||||||| || |||| || ||||| ||| Sbjct 501914 GACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGT 501855 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| ||||| || || | ||| Sbjct 501854 GGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCC 501795 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||||||||||||||||| |||||||| | ||| || |||||| Sbjct 501794 ACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 149 bits (164), Expect = 1e-30 Identities = 179/244 (73%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||||||||| |||| | |||||| | ||| | ||| | || | ||||| Sbjct 502893 TTTTTAGTTTC-------CACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCT 502841 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 ||| || ||||| || |||| || | || |||||||||||||| |||||||| || | Sbjct 502840 GAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACC 502781 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 || || || ||||| || |||||||| ||||| |||||| ||||||||| || | Sbjct 502780 GTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGG 502721 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 |||| || | ||| ||||| | || || ||||||||||| || ||||| | |||||| | Sbjct 502720 TATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTT 502661 Query 172066 GCAT 172069 |||| Sbjct 502660 GCAT 502657 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| || | ||| | ||| | ||||| || || ||||| Sbjct 502658 ATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 502599 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| | || ||||| |||||||| |||||||| |||| ||| || || ||| Sbjct 502598 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 502539 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| ||| ||||| || |||||||| | || Sbjct 502538 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCA 502479 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| ||||||||||| || || || | ||| || ||||| Sbjct 502478 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | ||| | ||||| ||||| || |||||||| Sbjct 502202 ATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA 502143 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | |||||||||||||||||| |||| || || || ||| Sbjct 502142 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 502083 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || || || || | ||| Sbjct 502082 GGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 502023 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| || ||||||||||| ||||| | || || ||||| Sbjct 502022 ACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || ||||| || | ||| | || | ||||| ||||||||||| Sbjct 502430 ATACCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCA 502371 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| | || ||||| |||||||| ||||| || || | || || || ||| Sbjct 502370 CTCAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGT 502311 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || |||||| ||| ||||| || ||||| || | || Sbjct 502310 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCG 502251 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||||| || || || |||||||| | || || ||||| Sbjct 502250 ACTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| ||||| || || | ||||| ||| |||||||| Sbjct 501446 ATACCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCG 501387 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||||||||| |||||||| || ||||| || || || ||| Sbjct 501386 GACAATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGT 501327 Query 171960 GGTATTCCT 171968 || || ||| Sbjct 501326 GGAATACCT 501318 >seq1489 Length=23360 Score = 168 bits (186), Expect = 1e-36 Identities = 176/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | |||||||||||| | ||| | || | || || || || ||||| Sbjct 6015 ATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCG 6074 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| | || |||||||| || |||||||| || |||| || ||||| ||| Sbjct 6075 GACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGT 6134 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| ||||| || || | ||| Sbjct 6135 GGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCC 6194 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||||||||||||||||| |||||||| | ||| || |||||| Sbjct 6195 ACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 149 bits (164), Expect = 1e-30 Identities = 179/244 (73%), Gaps = 7/244 (3%) Strand=Plus/Plus Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||||||||| |||| | |||||| | ||| | ||| | || | ||||| Sbjct 5096 TTTTTAGTTTC-------CACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCT 5148 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 ||| || ||||| || |||| || | || |||||||||||||| |||||||| || | Sbjct 5149 GAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACC 5208 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 || || || ||||| || |||||||| ||||| |||||| ||||||||| || | Sbjct 5209 GTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGG 5268 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 |||| || | ||| ||||| | || || ||||||||||| || ||||| | |||||| | Sbjct 5269 TATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTT 5328 Query 172066 GCAT 172069 |||| Sbjct 5329 GCAT 5332 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| ||||| || | ||| | ||| | ||||| || || ||||| Sbjct 5331 ATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 5390 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| | || ||||| |||||||| |||||||| |||| ||| || || ||| Sbjct 5391 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 5450 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| ||||| ||| ||||| || |||||||| | || Sbjct 5451 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCA 5510 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| ||||||||||| || || || | ||| || ||||| Sbjct 5511 ACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || || || | ||| | ||||| ||||| || |||||||| Sbjct 5787 ATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCA 5846 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | |||||||||||||||||| |||| || || || ||| Sbjct 5847 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 5906 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| ||||| ||| ||||| || || || || | ||| Sbjct 5907 GGGATACCTTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 5966 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| || ||||||||||| ||||| | || || ||||| Sbjct 5967 ACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || ||||| || | ||| | || | ||||| ||||||||||| Sbjct 5559 ATACCACCACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCA 5618 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| | || ||||| |||||||| ||||| || || | || || || ||| Sbjct 5619 CTCAATGTTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGT 5678 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || |||||| ||| ||||| || ||||| || | || Sbjct 5679 GGGATACCTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCG 5738 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||||| || || || |||||||| | || || ||||| Sbjct 5739 ACTTCCAATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | ||| ||||| || || | ||||| ||| |||||||| Sbjct 6543 ATACCACCACGAAGACGAAGTACCAAATGCAATGTCGATTCTTTTTGAATGTTATAATCG 6602 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || ||||||||||| |||||||| || ||||| || || || ||| Sbjct 6603 GACAATGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGT 6662 Query 171960 GGTATTCCT 171968 || || ||| Sbjct 6663 GGAATACCT 6671 >seq1658 Length=21299 Score = 150 bits (166), Expect = 3e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| |||||||| | ||| | || | ||||| ||| || ||||| Sbjct 17406 ATACCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCA 17347 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| | || |||||||| || || ||||| || || | || || || ||| Sbjct 17346 GACAAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGT 17287 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| |||||| ||| ||||| ||||| || || | ||| Sbjct 17286 GGGATACCTTCTTTGTCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCC 17227 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | |||||||||||||||||||| ||||| | || || |||||| Sbjct 17226 ACTTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 149 bits (164), Expect = 1e-30 Identities = 179/244 (73%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 171826 TTTTTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAG 171885 ||||||||||| |||| | |||||| | ||| | ||| | || | ||||| Sbjct 18327 TTTTTAGTTTC-------CACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCT 18275 Query 171886 AAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATC 171945 ||| || ||||| || |||| || | || |||||||||||||| |||||||| || | Sbjct 18274 GAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACC 18215 Query 171946 TCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAG 172005 || || || ||||| || |||||||| ||||| |||||| ||||||||| || | Sbjct 18214 GTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTTACATTTTCAATGG 18155 Query 172006 TATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCT 172065 |||| || | ||| ||||| | || || ||||||||||| || ||||| | |||||| | Sbjct 18154 TATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTT 18095 Query 172066 GCAT 172069 |||| Sbjct 18094 GCAT 18091 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | ||| | ||||| ||||| ||||||||||| Sbjct 17863 ATACCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCA 17804 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | || | || |||||||||||||| |||||||| || | ||||| || ||| Sbjct 17803 CTCAATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGT 17744 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || |||||| ||| || || || |||||||| | || Sbjct 17743 GGAATTCCTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCG 17684 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||||||||| || || |||||||| | || || ||||| Sbjct 17683 ACTTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 143 bits (158), Expect = 5e-29 Identities = 171/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || || || | ||| | ||| | ||||| || || ||||| Sbjct 18092 ATACCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCA 18033 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | ||| | || ||||| |||||||| |||||||| |||| ||| || || ||| Sbjct 18032 CTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGT 17973 Query 171960 GGTATTCCTTCTTTATCTTGTATTTT-ATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || ||||||||||||||||| ||||| |||| ||||| || |||||||| | || Sbjct 17972 GGGATTCCTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTC 17913 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||||| ||||||||||| || || || | |||||| ||||| Sbjct 17912 AACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || ||||| || | ||| | ||| | || || || ||||| || Sbjct 17635 ATGCCACCACGTAGACGTAAGACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCA 17576 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | || || | |||||||||||||||||| |||| || || || ||| Sbjct 17575 GATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGT 17516 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| ||||| ||| ||||| || || || || | ||| Sbjct 17515 GGAATACCCTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCG 17456 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 ||||| || ||||| || ||||||||||| ||||| Sbjct 17455 ACTTCCAGTGTAATAGTCTTACCAGTTAAGGTTTT 17421 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 171966 CCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCT 172025 |||||||||||||| |||||| || ||||| || || || || | ||| ||||| Sbjct 16980 CCTTCTTTATCTTGAATTTTAGCCTTAACATTTTCGATTGTGTCCGATGGTTCCACTTCC 16921 Query 172026 AGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||||||||||||||| || ||||||| ||| || ||||| Sbjct 16920 AATGTAATGGTTTTACCAGTCAAAGTTTTAACGAAAATTTGCAT 16877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905116697974800