Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1179 194 5e-44 seq1123 172 2e-37 seq1705 129 2e-24 seq659 102 2e-16 >seq1179 Length=350002 Score = 194 bits (214), Expect = 5e-44 Identities = 636/972 (65%), Gaps = 26/972 (3%) Strand=Plus/Minus Query 155312 TTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCTC 155371 ||||| || || |||||||||| ||||| || | |||| | | |||||| || Sbjct 62650 TTCCAATGCACCATAATAAATTGTTTCAAATATTTGAATATTCATTTGTTTAGCTTCGAG 62591 Query 155372 AGATGTAAATGCGATATC-CATCTTGAAAAATGTGTCGGCTAAACCCTGAACTCCAATAC 155430 | | | ||| |||| | ||| | |||| ||||||||||| || || ||||| | Sbjct 62590 ACTTTCATATG-GATAACGCATTAAGTTGAATGCATCGGCTAAACCTTGTACACCAATTC 62532 Query 155431 CGACTGGGCGATGCCTGTAATTGCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAATTCACA 155489 | | || ||||| | ||| | | | || |||| || ||| |||||||| | Sbjct 62531 CAATCGGTCGATGAC-GTAGATTCGAACGTTTCGCTTCCGGTAATGGATAAAAATTACTA 62473 Query 155490 TCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTCACATAG 155549 || ||||| || || |||||| | || ||| || | ||| | ||| |||| Sbjct 62472 TCGATAATTTTGTTCAAATTTTTTGTCATTACTTTAACAATTTCTTTGAGTTTATCATAA 62413 Query 155550 TCAAATGTTTTATCCTC---ATTTACAAA-CATACCAA-GACCAATAGACGCCAGATTAC 155604 |||||||| | || || ||||| | | ||| || ||| || |||| ||||| Sbjct 62412 TCAAATGTAAAAAGCTTTGGATCGACAAAACGTGGCAATGA--AATTGAAGCCAAATTAC 62355 Query 155605 ATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTCACAGCACAGGTTAGAACT 155662 | || ||| | || | | | || ||||| ||||| || || || || |||| Sbjct 62354 AAACGGCAATTTCATCAGCT--GATGAATATTCAACAATTTCCGTACAAAGATTTGAACA 62297 Query 155663 CTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAAT 155722 |||||||| || ||||| | || || ||||||| |||||| ||| || |||| || Sbjct 62296 TTTGATGGTTCCCAAATTTTGTTGATTTGATTTACGATTACAATGATCTTTATATACCAT 62237 Query 155723 GTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATT 155782 |||||| || || || || || ||||| |||| ||| | ||| | ||| | || || Sbjct 62236 GTATGGAGTACCAGTTTCAATTTGTGCATCCAAAATGGCAAACCATAAATCATGTGCTTT 62177 Query 155783 AATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATACAGCGTTCGGTAATCC 155840 | ||| || | ||||| |||||||| ||||||| || || | | || Sbjct 62176 CACTTGTGACCGATAACGACCTTCACGCTCATATTGTTCATATA--GCTTTTCGAATTCT 62119 Query 155841 TCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTA 155900 ||||| |||| ||| ||||| || || | || || || | || ||||| || | Sbjct 62118 TCACCCCAACATTCATGAAGTCCGGGACATTCATTTGGACACATCAATGACCACATACCA 62059 Query 155901 TTACCGATT--ACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCC 155958 | || || ||||| | |||||| | ||| ||| | |||||||| ||||| | Sbjct 62058 T--CCATTTCAACACGTTTCATAAACAAATCCGGTATCCACAATGCATAGAATAGGTCAC 62001 Query 155959 TTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAG 156018 ||| | ||| || || |||||| ||| || || || | |||||| | Sbjct 62000 GTGCACGTAGCTCTTCGGAACCAGTATTCTTTTTTAGATCCAAAAAGGCAAAAATATCTG 61941 Query 156019 GATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTA 156075 ||| |||||||| ||| |||||||| ||| | || ||||| ||||| | Sbjct 61940 CATGCCATGGCTCCAAATAGATAGCAAATGCACCTGGACGTTTTCCACCACCTTGATCCA 61881 Query 156076 CATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCAT 156135 |||| || ||||| |||||||| |||| || ||| || | | |||||||||| |||| Sbjct 61880 CATAACGTGCAGTGTTATTGAATACACGTAACATTGGTACTAAACCATTGGAAAAACCAT 61821 Query 156136 TGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCAC 156195 | || || ||||| |||||| ||| |||| | ||||| || || |||||||||| Sbjct 61820 TCGTACCAGCAATATATGAACCATGTGAACGAATACAATGAACATTAAGGCCAATACCAC 61761 Query 156196 CTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAAT 156255 | | |||| ||||| || |||| || | |||| | || |||||||| || Sbjct 61760 CGGCAGATTTCGAAATAATTGCACATTGTTTCAATGTATCATAGATGCCTTCAATGCTAT 61701 Query 156256 CATCTTCCATTG 156267 |||| |||||| Sbjct 61700 CATCGCCCATTG 61689 >seq1123 Length=366939 Score = 172 bits (190), Expect = 2e-37 Identities = 502/763 (66%), Gaps = 15/763 (2%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTG--TATTCTACAATCTC 155644 |||| || || | |||||| || ||| | || | | | | || ||||| |||||||| Sbjct 24048 CAATCGAGGCTAAATTACAGACAGCAATTTCATCTT--TAGATGAATATTCCACAATCTC 24105 Query 155645 ACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACA 155704 || || ||||||| ||||| || || | ||| | || || ||||||| ||||| Sbjct 24106 CGTACAAAGATTAGAACATTTGATTGTACCAAGATTTTGTTGATTTGATTTACGATTACA 24165 Query 155705 AGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAG 155764 | |||||| || | || || || || || || || || |||| || | ||| | Sbjct 24166 ATGATCCTTATAAACCATATACGGTGTGCCAGTTTCGATTTGTGATTCAATAATGGAAAA 24225 Query 155765 CCAGAGGTCACGGGCATTAATTTGCTTGTTG-TATCTGCCTTCCGACTCATATT--TCAT 155821 ||| || ||||| ||| | ||| | | | |||| ||| ||||| | |||| Sbjct 24226 CCAAAGATCACGAGCACGACATTG-TGATCGATATCGTTTTTCATTTTCATAATGTTCAT 24284 Query 155822 ATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCA 155881 ||| || || | || ||||| |||||||| | |||||| |||| || || || Sbjct 24285 ATA--GCTTTTCAAATTCTTCACCCCAACAATCAAATAATCCAGGACACTCATTCGGACA 24342 Query 155882 AAACAGCGACCAAATTTTATTACCGATT-ACACGCTCCATAAATACATCACTCGCCCAAA 155940 | || ||||| ||| || ||| ||||| | ||| |||| |||| ||||| Sbjct 24343 CATCAATGACCACATTGCATCTT-GATCCACACGTTTCATGAATAAATCAGGAATCCAAA 24401 Query 155941 TAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTA 156000 ||||| || | || | ||| | | || || ||| ||| || || || | || Sbjct 24402 GGGCATAAAATAAATCACGTGCACGTAATTCTTCGGATCCGGTATTTTTACGAAGATTTA 24461 Query 156001 AGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCC--- 156057 || || ||||| | ||| ||| || ||||| || ||||| ||| | Sbjct 24462 TAAAATCAAAGATATCCGAATGCCATGGTTCTAGATAGATGGCAAATGCTCCAGGACGTT 24521 Query 156058 TCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAA 156117 | |||||||| ||||| ||||| ||||| || |||||| | |||| || |||||||| | Sbjct 24522 TGTTGCCACCTTGATCAACATATCGAGCCGTATTATTGTATACACGTAACATAGGAACCA 24581 Query 156118 TACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAA 156177 ||||| ||| ||||| || ||| ||||| |||||| || || | | ||||| Sbjct 24582 AGCCATTAGAAAATCCATTCGTACCGGCAATATAACTACCAGAAGATCGGATACAATGAA 24641 Query 156178 TATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGA 156237 || || |||||||| || | |||| ||||| || || | || | |||| Sbjct 24642 CATTAAGACCAATACCGCCAGCTGATTTTGAAATAATGGCACAATTTTTAAGGGTATCAT 24701 Query 156238 AAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTC 156297 | |||||||||||| |||||| ||| | || ||| | || || |||||| || | Sbjct 24702 ATATACCTTCAATACTATCATCACTCATAGTAAGCAGAAAACATGATGATAATTGTGGCC 24761 Query 156298 GTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAA 156340 || ||| || || || || | |||||||| |||||| |||| Sbjct 24762 GTTTTGTGCCGGCATTAAACAATGTAGGTGATGCATGTGTAAA 24804 >seq1705 Length=717327 Score = 129 bits (142), Expect = 2e-24 Identities = 380/575 (66%), Gaps = 18/575 (3%) Strand=Plus/Minus Query 133070 AATAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAG 133129 ||| | |||||| |||| |||||| | | | || |||||| |||||||||||| Sbjct 626327 AATCGTTTTGTTTTGTTTCCAATTCAATATCATGACATTTGGATCATGTATAAAAAAGCT 626268 Query 133130 CAAGATTTATTTTGGAC--TTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGG 133187 ||| | ||| ||||| || || ||||| ||| || || ||||| ||| Sbjct 626267 GAAGCATCATTCTGGACAGTTGAA--GAAGTGGATCTAAGTCGTGATATTGCCCATTGG- 626211 Query 133188 AAGCCCTT-ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGC 133245 || | || | || ||||||||||||| ||| | ||| | || || ||||||||||| Sbjct 626210 AATCAATTGAATGCAAATGAAAAACATTTCATTACACATG-TATTGGCATTTTTTGCTGC 626152 Query 133246 GAGTGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGC 133305 || ||||||||||| ||||||| | | ||| ||||| | || || ||| | | Sbjct 626151 AAGCGATGGTATTGTCAATGAAAATCTGGCCGAACGTTTTATTCGTGATGTACAAATACC 626092 Query 133306 CGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATA 133365 ||||| ||| |||||||| | || ||||| || |||||| | ||||| | || Sbjct 626091 AGAAGCACGTTGTTTTTATGGCTTTCAAATTGCCATTGAAAATGTTCATTCAGAAATGTA 626032 Query 133366 TTCTACTCTAATTGATACTTACATCAAAGAT---ACCGTCCAGAAGCACA--AACTATTC 133420 ||| | |||||| ||||| | || | ||| ||| | | |||||| Sbjct 626031 TTC----ATTATTGATCAATACAT-ATGTATCGGATCGTAGTGAACAAGATTTTCTATTC 625977 Query 133421 AACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATC 133480 || ||||| | | || |||||| | |||| ||| || | |||||||| |||| | Sbjct 625976 AATGCCATACGTAATTTACCTTGTGTAGAAAAAAAAGCTAAATGGGCTATACGTTGGACC 625917 Query 133481 CAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtt 133540 ||||| | | | || ||| ||| | |||| ||||| | || || || || Sbjct 625916 CAGGATGATTCAGTTACATTCGCTGAACGTTTGATTGCATTTGCAGCCGTTGAAGGAATC 625857 Query 133541 tttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGA 133600 ||||| |||| | || | | ||||||||||||||||| ||||| | | ||||| Sbjct 625856 TTTTTTTCTGGTTCATTTGCCGCAATTTTTTGGCTTAAAAAACGTGGCCTCATGCCTGGT 625797 Query 133601 CTGTGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 || ||||| || ||| | |||||| | || || Sbjct 625796 CTTACATTTTCGAATGAATTGATTTCACGTGATGA 625762 >seq659 Length=572639 Score = 102 bits (112), Expect = 2e-16 Identities = 215/317 (68%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||| ||||||||||| ||||| || | | || |||| ||||| | || ||||| Sbjct 248321 ACCAACGGCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGC 248380 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | |||| ||||| || | |||| ||| ||| ||||||| | ||| || || | Sbjct 248381 AAACATATCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCC 248440 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 ||||| ||||| | || || ||||| || ||| || | || | || || || Sbjct 248441 AGATACGGTGATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTT 248500 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC- 289266 ||| || || |||||||| || || | || ||||| | || || |||| | | Sbjct 248501 ACCAGTACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACCCA--ATTCG 248558 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 | ||| || |||||| ||| | |||| |||| || ||| |||| ||||| Sbjct 248559 GTGTATCGTGATGGATTCTTTAGAAAATTGACAAATTCCATAATTTCCAATTTAGCCTCT 248618 Query 289327 TCACATCCTGCTACATC 289343 ||||| || |||||||| Sbjct 248619 TCACAGCCAGCTACATC 248635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471785428826922