Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq206 107 2e-18 >seq206 Length=237414 Score = 107 bits (118), Expect = 2e-18 Identities = 180/259 (69%), Gaps = 1/259 (0%) Strand=Plus/Minus Query 172396 TCAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAG 172455 || |||| ||| ||||| || | |||| |||||||| || ||| | | ||| | || Sbjct 142159 TCGAAGAGCTTCTATGGTTTCTACAAGGATCAACTGACTCGAAAAAGCTGTCTGAAAAAG 142100 Query 172456 GTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTG 172515 |||| ||| | ||| ||| ||||| || || |||||| | ||| |||||| | | Sbjct 142099 GTGTAAAAATCTGGGATGCAAATGGATCACGAGAATTTCTCGATAGCCTTGGGTTTGCCG 142040 Query 172516 AAAGAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTC 172575 | | ||||||||||| |||| ||| | ||||| ||||||||||||||| || || Sbjct 142039 ATCGTCAAGAAGGTGATCTAGGTCCAGTATATGGTTTTCAATGGAGACATTTTGGTGCCG 141980 Query 172576 AATATATCGACTGTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTA 172635 ||||| ||| || | ||||| | | ||||| || || ||||||| || || Sbjct 141979 AATATCGAGACAAAAATTCCGATTATAATGCTCAAGGTGTTGATCAATTAAAACAGCTTA 141920 Query 172636 TTAATACTTTACAAAACAA 172654 | |||| | |||||||| Sbjct 141919 TCCATACGAT-CAAAACAA 141902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632476112159280