Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1705 89.7 4e-13 seq1489 89.7 4e-13 seq1658 86.0 5e-12 >seq1705 Length=717327 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| ||||| || || ||||| ||||| | ||| ||| | Sbjct 502429 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 502488 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 502489 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 502548 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | |||| ||| ||||||||| |||| || | | ||| || || |||||| Sbjct 502549 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 502608 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||| || || || Sbjct 502609 ATCCAAAAAGAATCCAC 502625 >seq1489 Length=23360 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| ||||| || || ||||| ||||| | ||| ||| | Sbjct 5560 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 5501 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || ||| || ||| ||||||||||| | || |||||| Sbjct 5500 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5441 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| || | |||| ||| ||||||||| |||| || | | ||| || || |||||| Sbjct 5440 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 5381 Query 107736 ATTCAAAAGGAGTCTAC 107752 || ||||| || || || Sbjct 5380 ATCCAAAAAGAATCCAC 5364 >seq1658 Length=21299 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| ||||| || || ||||| ||||| | ||| ||| | Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 17921 Query 107616 GATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | || |||| || ||| ||||||||||| | || ||||| Sbjct 17922 GATACAATCGAAAATGTGAAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA 17981 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | |||| ||| ||||||||| |||| || | | ||| || || ||||| Sbjct 17982 GCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAA 18041 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| ||||| || || || | || | |||||| Sbjct 18042 CATCCAAAAAGAATCCACTCTCCATCTTGTGTTG 18075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398868506603434