Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1658 158 2e-33 seq1705 143 4e-29 seq1489 143 4e-29 >seq1658 Length=21299 Score = 158 bits (174), Expect = 2e-33 Identities = 180/239 (75%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| || | |||||||| || || ||||| |||||| | || || || | || | Sbjct 17635 TGCAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATCA- 17693 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| |||| || ||| |||||| || |||||||| |||||||| |||||| Sbjct 17694 GATACCATTGAAAACGTGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATCAA 17753 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | |||||||| ||||||||||| || ||| ||||| || | ||||||||| Sbjct 17754 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAAT 17813 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || ||||||||||| ||| ||||| | || || || | | || |||| ||||||| Sbjct 17814 ATCCAAAAAGAATCTACTCTCCATCTTGTGTTGCGTCTTCGTGGTGGTATGCAAATATT 17872 Score = 143 bits (158), Expect = 4e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| ||||||| || || || |||||||| || | || || |||| | Sbjct 18092 TGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGG 18151 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| |||||| ||| |||||||| || ||||| ||||| | Sbjct 18152 ATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGC 18211 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || ||| | || || | ||||| || | Sbjct 18212 AACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACA 18271 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATAT 146268 | || |||||||| || ||||| | ||| | ||| | | || || || |||| || Sbjct 18272 TTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGGAAACTAAAAAT 18328 Score = 134 bits (148), Expect = 2e-26 Identities = 176/240 (73%), Gaps = 3/240 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||||||| | || || || || || ||||||||||| | || || || | || | Sbjct 17863 TGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA- 17921 Query 146091 GATACTATTCAAAATGTAAAAAAT-AAAATACAACTTAAAGAAGGCATTCCACCCGATCA 146149 ||||| || ||||||| |||| ||||| ||| ||||||||| || ||||| ||||| Sbjct 17922 GATACAATCGAAAATGTGAAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA 17981 Query 146150 ACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAA 146209 || || | |||||||| |||||||| || || ||| |||| || | ||||| || Sbjct 17982 GCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAA 18041 Query 146210 TATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || ||||||||||| ||| ||||| | || || || | | || |||| ||||||| Sbjct 18042 CATCCAAAAAGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGTGGTATGCAAATATT 18101 Score = 129 bits (142), Expect = 9e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || ||||| ||||| | || || |||| | Sbjct 17178 TGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATCGG 17237 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| ||| |||||| ||| |||||||| || ||||| ||||| | Sbjct 17238 ACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAGC 17297 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || || ||||| || ||| | |||| || | ||||| || | Sbjct 17298 AACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACAACA 17357 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||||||||| || | ||| | |||||||| Sbjct 17358 TTCAAAAAGAATCCACCCTTCATCTTGTATTACG 17391 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| ||| | | || ||||| || ||||||||||| ||| | | Sbjct 17050 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCG 17109 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 ||| || | ||||| ||||| ||||||||||| || | ||||| ||||| || Sbjct 17110 AACTTTGTCCGATTACAATATTCAAAAAGAATCTACATTGCATTTGGTATTGCG 17163 >seq1705 Length=717327 Score = 143 bits (158), Expect = 4e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| ||||||| || || || |||||||| || | || || |||| | Sbjct 502658 TGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGG 502717 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| |||||| ||| |||||||| || ||||| ||||| | Sbjct 502718 ATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGC 502777 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || ||| | || || | ||||| || | Sbjct 502778 AACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACA 502837 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATAT 146268 | || |||||||| || ||||| | ||| | ||| | | || || || |||| || Sbjct 502838 TTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGGAAACTAAAAAT 502894 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || || || ||||| | || || |||| | Sbjct 501974 TGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCGG 502033 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| ||||| ||| ||||||||| || ||||| ||||| | Sbjct 502034 ACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAGC 502093 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | |||||||| ||||||||| | || ||| | || ||| | |||||||| | Sbjct 502094 AACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAACA 502153 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | || || || || | || |||| Sbjct 502154 TCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGGTA 502201 Score = 136 bits (150), Expect = 6e-27 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | || || || || || ||||||||||| | || || || ||| | Sbjct 502430 TGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA- 502488 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| ||| ||||| ||| ||||||||| || ||||| ||||| Sbjct 502489 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 502548 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | |||||||| |||||||| || || ||| |||| || | ||||| || Sbjct 502549 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 502608 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || ||||||||||| ||| ||||| | || ||||| | | || |||| ||||||| Sbjct 502609 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTACGTCTTCGTGGTGGTATGCAAATATT 502667 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| || || || || ||||| | || || || | || Sbjct 502202 TGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCCG 502261 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| || |||||||| || ||||| ||||| | Sbjct 502262 ATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAGC 502321 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||| || || ||| |||| || | |||||||||| Sbjct 502322 AACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAATA 502381 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || ||||| | || ||||| || | || |||| Sbjct 502382 TCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGGTA 502429 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| ||| | | || ||||| || ||||||||||| ||| | | Sbjct 501618 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCG 501677 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 ||| || | ||||||||||| ||||| ||||| || | ||||| ||||| || Sbjct 501678 AACTTTGTCCGATTATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCG 501731 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| |||||| | || ||||| || |||||||| || ||| | Sbjct 501318 AGGTATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCG 501377 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || | |||||||| || |||||||||||||| | ||||| ||| Sbjct 501378 TACATTGTCCGATTATAACATTCAAAAAGAATCGACATTGCATTTGGTA 501426 >seq1489 Length=23360 Score = 143 bits (158), Expect = 4e-29 Identities = 174/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| ||||||| || || || |||||||| || | || || |||| | Sbjct 5331 TGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGG 5272 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||||||| |||||| ||| |||||||| || ||||| ||||| | Sbjct 5271 ATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGC 5212 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||||||||| || ||| | || || | ||||| || | Sbjct 5211 AACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACA 5152 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATAT 146268 | || |||||||| || ||||| | ||| | ||| | | || || || |||| || Sbjct 5151 TTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGGAAACTAAAAAT 5095 Score = 136 bits (150), Expect = 6e-27 Identities = 175/239 (73%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 ||||||| ||| | || || || || || ||||||||||| | || || || | || | Sbjct 5559 TGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA- 5501 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| || ||||||| ||| ||||| ||| ||||||||| || ||||| ||||| Sbjct 5500 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5441 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 || || | |||||||| |||||||| || || ||| |||| || | ||||| || Sbjct 5440 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 5381 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || ||||||||||| ||| ||||| | || ||||| | | || |||| ||||||| Sbjct 5380 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTACGTCTTCGTGGTGGTATGCAAATATT 5322 Score = 136 bits (150), Expect = 6e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| || || || ||||| | || || |||| | Sbjct 6015 TGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCGG 5956 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| ||| ||||| ||| ||||||||| || ||||| ||||| | Sbjct 5955 ACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAGC 5896 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | |||||||| ||||||||| | || ||| | || ||| | |||||||| | Sbjct 5895 AACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAACA 5836 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | || || || || | || |||| Sbjct 5835 TCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGGTA 5788 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| || || || || ||||| | || || || | || Sbjct 5787 TGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCCG 5728 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| || |||||||| || ||||| ||||| | Sbjct 5727 ATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAGC 5668 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| |||||||| || || ||| |||| || | |||||||||| Sbjct 5667 AACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAATA 5608 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || ||||| | || ||||| || | || |||| Sbjct 5607 TCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGGTA 5560 Score = 89.7 bits (98), Expect = 8e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| ||| | | || ||||| || ||||||||||| ||| | | Sbjct 6371 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCG 6312 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 ||| || | ||||||||||| ||||| ||||| || | ||||| ||||| || Sbjct 6311 AACTTTGTCCGATTATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCG 6258 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| |||||||| ||||| |||||| | || ||||| || |||||||| || ||| | Sbjct 6671 AGGTATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCG 6612 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTA 146240 || || | |||||||| || |||||||||||||| | ||||| ||| Sbjct 6611 TACATTGTCCGATTATAACATTCAAAAAGAATCGACATTGCATTTGGTA 6563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786149635001520