Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq206 111 2e-19 >seq206 Length=237414 Score = 111 bits (122), Expect = 2e-19 Identities = 179/256 (70%), Gaps = 1/256 (0%) Strand=Plus/Minus Query 171611 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 171670 |||| ||| ||||| || | |||| |||||||| || ||| | | ||| | ||||| Sbjct 142156 AAGAGCTTCTATGGTTTCTACAAGGATCAACTGACTCGAAAAAGCTGTCTGAAAAAGGTG 142097 Query 171671 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 171730 | ||| | ||| ||| ||||| || || |||||| | ||| |||||| | || Sbjct 142096 TAAAAATCTGGGATGCAAATGGATCACGAGAATTTCTCGATAGCCTTGGGTTTGCCGATC 142037 Query 171731 GAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 171790 | ||||||||||| |||||||| | ||||| ||||||||||||||| || || ||| Sbjct 142036 GTCAAGAAGGTGATCTAGGTCCAGTATATGGTTTTCAATGGAGACATTTTGGTGCCGAAT 141977 Query 171791 ATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTA 171850 || ||| || | ||||| | | ||||| || || ||||||| || ||| Sbjct 141976 ATCGAGACAAAAATTCCGATTATAATGCTCAAGGTGTTGATCAATTAAAACAGCTTATCC 141917 Query 171851 ATACTTTACAAAACAA 171866 |||| | |||||||| Sbjct 141916 ATACGAT-CAAAACAA 141902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628517796572160