Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1705 91.5 1e-13 seq1658 91.5 1e-13 seq1489 91.5 1e-13 >seq1705 Length=717327 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||||||| || || | | | || || | | Sbjct 502860 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA-TCTTCCAATT 502802 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || |||| | ||| ||||| || || ||||| ||||| ||||| ||| | Sbjct 502801 GTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT-TGAATT 502743 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | |||| || || | || ||||| || | ||||| ||||| || Sbjct 502742 TTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCA 502683 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||||||| || ||||| Sbjct 502682 GTCAAAGTTTTTACGAATATTTGCAT 502657 >seq1658 Length=21299 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||||||| || || | | | || || | | Sbjct 18294 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA-TCTTCCAATT 18236 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || |||| | ||| ||||| || || ||||| ||||| ||||| ||| | Sbjct 18235 GTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT-TGAATT 18177 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | |||| || || | || ||||| || | ||||| ||||| || Sbjct 18176 TTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCA 18117 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||||||| || ||||| Sbjct 18116 GTCAAAGTTTTTACGAATATTTGCAT 18091 >seq1489 Length=23360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | |||||| |||||||| || ||||||||| || || | | | || || | | Sbjct 5129 ATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA-TCTTCCAATT 5187 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 | || || || |||| | ||| ||||| || || ||||| ||||| ||||| ||| | Sbjct 5188 GTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCT-TGAATT 5246 Query 133576 TTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || |||| | | |||| || || | || ||||| || | ||||| ||||| || Sbjct 5247 TTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATTGTTTTACCA 5306 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||||||||| || ||||| Sbjct 5307 GTCAAAGTTTTTACGAATATTTGCAT 5332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410491051440