Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1123 331 2e-85 seq1179 250 6e-61 seq1705 141 2e-28 seq895 104 6e-17 seq1300 89.7 1e-12 seq959 86.0 1e-11 seq1493 84.2 5e-11 seq955 84.2 5e-11 seq819 84.2 5e-11 >seq1123 Length=366939 Score = 331 bits (366), Expect = 2e-85 Identities = 541/779 (69%), Gaps = 3/779 (0%) Strand=Plus/Minus Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || ||||| ||||| | ||| ||| |||||||||||||| ||||||| | Sbjct 24903 GAACGACCCCAACATATGTTGATGCGTTGTGCTATTGGTATTCATGGTGATGATATCGAT 24844 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 || | |||||| ||| || || | |||| || ||||| | ||||| Sbjct 24843 GCCGCCATTGAAACGTATAATTTAATCTCGGAAAATTGGTTTACACATGCATCACCTACA 24784 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 | ||||| || || || || | |||||| | || || ||||| || || | Sbjct 24783 TTGTTTAATGCCGGCACAAAACGGCCACAATTATCATCATGTTTTCTGCTTACTATGAGT 24724 Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAAC 110603 |||||| |||||||||||| |||||| | |||||| | ||| ||||||| ||| Sbjct 24723 GATGATAGTATTGAAGGTATATATGATACCCTTAAAAATTGTGCCATTATTTCAAAATCA 24664 Query 110604 TCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACA 110663 |||| || |||||| || | |||||| ||| || || || |||| || Sbjct 24663 GCTGGCGGTATTGGTCTTAATGTTCATTGTATCCGATCTTCTGGTAGTTATATTGCCGGT 24604 Query 110664 GCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAA 110723 |||| || ||| | ||| | ||||| |||||| | || | ||| | || || | Sbjct 24603 ACGAATGGATTTTCTAATGGCTTGGTTCCTATGTTACGTGTATACAATAATACGGCTCGA 24544 Query 110724 TATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGG 110780 ||||| |||||||||| || | | | || ||||||| |||||||| ||||| ||| Sbjct 24543 TATGTTGATCAAGGTGGCAACAAACGTCCTGGAGCATTTGCCATCTATCTAGAACCATGG 24484 Query 110781 CATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGA 110840 ||||| ||||| ||||| || || | |||||||||||| |||| |||||| | | Sbjct 24483 CATTCGGATATCTTTGATTTTATAAATCTTCGTAAAAATACCGGATCCGAAGAATTACGT 24424 Query 110841 GCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAA 110900 |||||||||||||||||||| | |||||| | |||||||||||||||||||| | || Sbjct 24423 GCACGTGATTTATTTTATGCCCTTTGGATTCCTGATTTATTCATGAAACGTGTGGATCAA 24364 Query 110901 AATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGA 110960 ||| |||||||| | |||||||| || | |||||| ||| |||| | || Sbjct 24363 GATGCAATGTGGTCATTGATGTGTCCGAATGAGTGTCCTGGATTATTTGATTGTTGGGGT 24304 Query 110961 AAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATT 111020 |||| |||||| | || || ||| | |||||||| ||| | ||| |||| | Sbjct 24303 GAAGAATTTGAAAAGCTATATGAACATTATGAAAATGAAAAACGATATCGATCACAATGT 24244 Query 111021 CCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTAT 111080 | |||| || |||||||| || ||||||||||| | |||||||| || || ||| Sbjct 24243 CGTGCTCGTGATCTTTGGTTTTCCATTATTGAATCACAAATCGAAACTGGCACACCGTAT 24184 Query 111081 ATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || | ||||| |||||| |||||| ||||| |||||| ||| | || ||||| || Sbjct 24183 ATGGTTTATAAGGATCATTGTAATCGTAAATCAAATCAACAAAATCTTGGTACAATCAA 24125 Score = 93.3 bits (102), Expect = 1e-13 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 112957 ATTGGAAAAATCTTAAAGATAGTGTTATGAAACATGGAACTACAAACTC-TCTACTGTTG 113015 ||||||| || | |||| | | || |||||||| | ||| || | | | || | Sbjct 23654 ATTGGAACGATTTGAAAGCTCGAATTGCAAAACATGGTA-TACGAAATAGTTTGCTTGTA 23596 Query 113016 GCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAATGAATGTTTCGAGCCA 113075 || |||||||||||||||||||| ||||| ||||| || || ||||||| ||| || ||| Sbjct 23595 GCTCCAATGCCTACAGCTTCGACAGCACAAATTCTTGGGAACAATGAATCTTTTGAACCA 23536 Query 113076 ATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGGTGAGTTT 113120 |||||||||||| || |||||||||| | || || ||| Sbjct 23535 TATACAAGTAATATATACACAAGACGTGTTCTTTCCGGAGAATTT 23491 >seq1179 Length=350002 Score = 250 bits (276), Expect = 6e-61 Identities = 440/635 (69%), Gaps = 7/635 (1%) Strand=Plus/Plus Query 110510 ACAATTGGCTTCTTGCTTTCTTCTAGG-AATTAACGATGATTCTATTGAAGGTATTTATG 110568 |||| || | ||||| |||||| | | ||| ||||||| |||||||| || |||| Sbjct 61663 ACAAATGTCATCTTG-TTTCTTATTGACAATGGGCGATGATAGCATTGAAGGCATCTATG 61721 Query 110569 ATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628 || | | ||| || ||| ||||||| ||| | || || ||||| || | |||| Sbjct 61722 ATACATTGAAACAATGTGCAATTATTTCGAAATCTGCCGGTGGTATTGGCCTTAATGTTC 61781 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 || |||||| ||| | || || |||| || |||| ||| ||| | ||| | | Sbjct 61782 ATTGTATTCGTTCACATGGTTCATATATTGCTGGTACGAATGGTTTTTCCAATGGTTTAG 61841 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAA 110748 | ||||||||| | || ||||| |||||||| |||||| ||||||||||| | | Sbjct 61842 TACCAATGTTACGTGTATTCAATAACACTGCACGTTATGTGGATCAAGGTGGTGGAAAAC 61901 Query 110749 AT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 | || |||||||||||||| | || || |||||| ||||||| |||| || || | Sbjct 61902 GTCCAGGTGCATTTGCTATCTATTTGGAGCCATGGCATGCAGATATTTTTGCCTTTTTGG 61961 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | || || ||| || | ||||| | | | |||||||| |||| |||||| ||| Sbjct 61962 ATCTAAAAAAGAATACTGGTTCCGAAGAGCTACGTGCACGTGACCTATTCTATGCATTGT 62021 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 |||| | ||||| || |||||||||||| || |||| |||||||| | ||||||| Sbjct 62022 GGATACCGGATTTGTTTATGAAACGTGTTGAAATGGATGGTATGTGGTCATTGATGTGTC 62081 Query 110926 CTCATCGTTCTCCTGGTCTATCTG-ATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 | || | ||| || || || |||| | || |||| || ||| | || || ||| Sbjct 62082 CAAATGAATGTCCCGGACTTCATGAATGT-TGGGGTGAAGAATTCGAAAAGCTATATGAA 62140 Query 110985 AAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAA 111044 ||||||| ||||| | ||| |||| | ||| || || | ||||| Sbjct 62141 CAATATGAGCGTGAAGGTCGTTATCGGTCACAAGTGAAAGCACATGATTTATGGTTTGCC 62200 Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 || | || ||||| |||||||||| ||||| || || | |||||||||||| |||| Sbjct 62201 ATTTTGGATGCACAAATTGAAACTGGTACTCCATACATGGTATATAAAGATCATTGTAAT 62260 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAA 111139 || ||||| |||||| ||||| ||||| || || Sbjct 62261 CGTAAATCAAATCAACAAAATTTGGGAACCATCAA 62295 >seq1705 Length=717327 Score = 141 bits (156), Expect = 2e-28 Identities = 379/574 (66%), Gaps = 4/574 (1%) Strand=Plus/Minus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGAT-ATGTATAAGAAATCTGTTGCGGCCTTCTG 131493 ||||||||| || |||| || ||| ||| |||||||| ||| ||| || | ||||| Sbjct 626312 TTTCCAATTCAATATCATGACATTTG-GATCATGTATAAAAAAGCTGAAGCATCATTCTG 626254 Query 131494 GACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTTGAA 131553 ||| |||||||| | ||| | | ||||||| ||||| | |||| | || Sbjct 626253 GACAGTTGAAGAAGTGGATCTAAGTCGTGATATTGCCCATTGGAATCAATTGAATGCAAA 626194 Query 131554 TGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTAT 131613 ||||||| |||| || | | || | ||||| || || | ||| ||||| ||||| | Sbjct 626193 TGAAAAACATTTCATTACACATGTATTGGCATTTTTTGCTGCAAGCGATGGTATTGTCAA 626134 Query 131614 TGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTAACATCGTTCTA 131673 ||||||||| | ||| |||| || | | || || |||| | | || || Sbjct 626133 TGAAAATCTGGCCGAACGTTTTATTCGTGATGTACAAATACCAGAAGCACGTTGTTTTTA 626074 Query 131674 CACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTATTGATTGAGAG 131733 |||||| || ||||| | ||||| || ||||||||||||||||| | | Sbjct 626073 TGGCTTTCAAATTGCCATTGAAAATGTTCATTCAGAAATGTATTCATTATTGATCAATAC 626014 Query 131734 TCTTGTTAAAAAT-GAAGATGATAAAAATAAATTATTTGATGCTGTAAATAAATTTCCTG 131792 ||| || | || ||| || || |||| |||| || ||| || ||| Sbjct 626013 ATATGTATCGGATCGTAG-TGAACAAGATTTTCTATTCAATGCCATACGTAATTTACCTT 625955 Query 131793 CAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTT 131852 | |||| ||||| |||||||||| |||| || |||||||| | || || Sbjct 625954 GTGTAGAAAAAAAAGCTAAATGGGCTATACGTTGGACCCAGGATGATTCAGTTACATTCG 625895 Query 131853 CTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTG 131912 || | | | | || ||||| |||||||| || || ||||| ||| | || | Sbjct 625894 CTGAACGTTTGATTGCATTTGCAGCCGTTGAAGGAATCTTTTTTTCTGGTTCATTTGCCG 625835 Query 131913 CTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCA 131972 | || ||||||||||| || ||||| | |||||||| || |||| || ||| |||| | Sbjct 625834 CAATTTTTTGGCTTAAAAAACGTGGCCTCATGCCTGGTCTTACATTTTCGAATGAATTGA 625775 Query 131973 TCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 | || | ||||||| ||| ||| ||| ||||| Sbjct 625774 TTTCACGTGATGAAGGATTACATTGTGATTTTGC 625741 >seq895 Length=46405 Score = 104 bits (114), Expect = 6e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 |||| | || | || ||| | |||||| || | ||||||||| |||||||| ||||| Sbjct 15739 TGATGTGATTGTATTTAATCGACAACCAACATTACATAAAATGAGTATGATGGGACATAA 15798 Query 305383 AGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAA 305442 | | |||||| | | | |||||||| || ||| || | | || || ||||| Sbjct 15799 AATACGTGTATTACCATGGTCAACATTTCGTTTCAATCTATCGGTTACGACCCCATATAA 15858 Query 305443 TGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 ||| ||||||||||| |||||||||||| | |||||||| ||||| Sbjct 15859 TGCTGATTTTGATGGTGATGAAATGAATCTACATGTACCACAATC 15903 Score = 100 bits (110), Expect = 7e-16 Identities = 172/250 (69%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGCAGGCATCT 304945 ||||||| |||| | || || || | ||||||||||| | || ||| | ||| Sbjct 15243 TTACAATTTCATGTGGCCACGTTTGTTGATAATGAAATACCGGGCATTCCACGTGCACAG 15302 Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| |||||| | || || || ||| | ||||| | |||| ||||| || ||| Sbjct 15303 CAAAAATCTGGACGCCCATTGAAATCTATCAAACAACGATTGAAAGCAAAAGAAGGACGT 15362 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 ||||| || ||||| ||||| |||||||||||||| ||| | | || || ||||| Sbjct 15363 ATTCGTGGCAATCTTATGGGTAAACGTGTTGATTTCTCCGCACGTACCGTTATTACACCG 15422 Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACA 305125 ||| | | || || | ||||| | || || || | |||||| || |||||| Sbjct 15423 GATCCGAATCTTCGTATCGATGAAGTCGGTGTACCGCGTTCGATTGCTCAGAATCTAACA 15482 Query 305126 TTTCCAGAGA 305135 ||||| |||| Sbjct 15483 TTTCCCGAGA 15492 >seq1300 Length=312748 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 279056 AAATTATATGGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAA 279115 ||||| ||| ||||| ||||| || ||||||||| ||||| | ||| |||| Sbjct 58896 AAATTGACTGGCATTCCTAAACTAGAAGATGCAAACGATGCTGGTA--CAAAAAATTCAA 58839 Query 279116 --GAATGTGCTTTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTT 279173 || ||| | || |||| ||||| || |||||||| | ||| ||||||| | Sbjct 58838 TCGATTGTACACTAATTCTAACTGAAGGTGATTCTGCCAAATCTCTTGTTGTTGCTGGAT 58779 Query 279174 TATCTGTTATTGGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATG 279233 || ||| ||||||||||||||||||| ||||| ||| | |||||||| | | |||| Sbjct 58778 TAGGTGTAGTTGGTCGTGATAAATATGGTGTATTCCCTCTTCGAGGTAAAATGCTCAATG 58719 Query 279234 CTCGTGA 279240 ||||| Sbjct 58718 TACGTGA 58712 >seq959 Length=463534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 108/144 (75%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 113739 GGTACATATATGTTATGCGTCGAAGTTTCAATCATTTCATACttttttttCGTAAAAATA 113798 ||||||| |||||||| || || | ||| |||||| ||||| || ||||||||| Sbjct 60732 GGTACATCAATGTTATGAGTTGAGGGGCAAATATCTTCATATTTTTTATTGGTAAAAATA 60673 Query 113799 TCTGTCGCAACAAAATGACACTTT-GCATGACCATGTTTTCCAGTTTTTGATGT--TGAT 113855 ||| |||||| ||| ||||| |||||||||||||| ||||| ||||| || | || Sbjct 60672 TCTAAACCAACAAGATGT-ACTTTAGCATGACCATGTTTACCAGTCTTTGAGGTACTCAT 60614 Query 113856 ATGGAATTTACTTTACACGGACGA 113879 | | | |||||||| |||||| Sbjct 60613 TTCCA--TGACTTTACATGGACGA 60592 >seq1493 Length=23257 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 72156 CATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGC 72215 ||| || ||| ||||||||||| ||||| ||||| || ||| |||| ||| | Sbjct 7376 CATACCGGAAACAACTTTGCCAAATACAACATGTTTACCATCTAACCATGGTGTTGGTAC 7435 Query 72216 AAGTGTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAA 72275 | ||||||||||||||| || ||| | ||| || || || || ||||| || | || Sbjct 7436 TAATGTAATGAAGAATTGTGATCCATTCGTATCTGGGCCAGAATTTGCCATCGATAATAA 7495 Query 72276 ACCTGCTTCTGAATGCTTTAATA-AGAAATTCTCATCTTCAAA 72317 ||| ||||| | ||| ||||||| ||||| ||||| |||| Sbjct 7496 ACCGGCTTCGGTATG-TTTAATATTAAAATTTTCATCAGCAAA 7537 >seq955 Length=36419 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 72156 CATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGC 72215 ||| || ||| ||||||||||| ||||| ||||| || ||| |||| ||| | Sbjct 5353 CATACCGGAAACAACTTTGCCAAATACAACATGTTTACCATCTAACCATGGTGTTGGTAC 5412 Query 72216 AAGTGTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAA 72275 | ||||||||||||||| || ||| | ||| || || || || ||||| || | || Sbjct 5413 TAATGTAATGAAGAATTGTGATCCATTCGTATCTGGGCCAGAATTTGCCATCGATAATAA 5472 Query 72276 ACCTGCTTCTGAATGCTTTAATA-AGAAATTCTCATCTTCAAA 72317 ||| ||||| | ||| ||||||| ||||| ||||| |||| Sbjct 5473 ACCGGCTTCGGTATG-TTTAATATTAAAATTTTCATCAGCAAA 5514 >seq819 Length=92159 Score = 84.2 bits (92), Expect = 5e-11 Identities = 118/163 (72%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 72156 CATTCCAGAAGTTACTTTGCCAAACACAACGTGTTTGTTATTTAAATGTGGTTGAGGTGC 72215 ||| || ||| ||||||||||| ||||| ||||| || ||| |||| ||| | Sbjct 34293 CATACCGGAAACAACTTTGCCAAATACAACATGTTTACCATCTAACCATGGTGTTGGTAC 34234 Query 72216 AAGTGTAATGAAGAATTGCGAGTTATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAA 72275 | ||||||||||||||| || ||| | ||| || || || || ||||| || | || Sbjct 34233 TAATGTAATGAAGAATTGTGATCCATTCGTATCTGGGCCAGAATTTGCCATCGATAATAA 34174 Query 72276 ACCTGCTTCTGAATGCTTTAATA-AGAAATTCTCATCTTCAAA 72317 ||| ||||| | ||| ||||||| ||||| ||||| |||| Sbjct 34173 ACCGGCTTCGGTATG-TTTAATATTAAAATTTTCATCAGCAAA 34132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186786858497466