Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq1705 127 5e-24 seq1489 127 5e-24 seq1658 118 3e-21 >seq1705 Length=717327 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || |||||||||||| |||||||| | ||| Sbjct 501760 AAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCTGACACTATTGAAAAT 501819 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || ||| ||| || | ||||| Sbjct 501820 GTCAAAGCTAAA-ATCCAAGATAAAGAAGGTATCCCACCAGACCAGCAACGATTGATCTT 501878 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| ||||| ||||| | |||||| ||||||||||| |||| || || || Sbjct 501879 TGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAACATCCAAAAGGAATC 501938 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || ||||||| Sbjct 501939 CACCCTTCATCTCGTATTACGACTTCG 501965 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| || || || | ||| Sbjct 502672 AAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGGATACCATTGAAAAT 502731 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || ||| | | || || Sbjct 502732 GTAAAAGCTAAA-ATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAACGGTTGATTTT 502790 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || ||||||||||| | |||||| ||||||||||| | |||||||| || Sbjct 502791 TGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACATTCAGAAAGAATC 502850 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| || ||||||| Sbjct 502851 CACCCTCCATCTTGTACTGCGACTTCG 502877 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| || || |||||||| || || || ||| ||||| || ||||| Sbjct 502453 ACTGGTAAAACAATTACATTGGAAGTTGAGCCATCAGATACAATCGAAAATGTGAAAGCC 502512 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| ||||||||||| || || || || | || || ||||| || Sbjct 502513 AAA-ATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAGCGATTGATTTTTGCCGGTAA 502571 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||||||||| | || ||| ||||||||| |||| ||||| || ||||| || Sbjct 502572 ACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAACATCCAAAAAGAATCCACTCTCCA 502631 Query 206373 CCTTGTTTTGAGACTTCG 206390 ||||| || | ||||| Sbjct 502632 TCTTGTGTTACGTCTTCG 502649 >seq1489 Length=23360 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || || |||||||||||| |||||||| | ||| Sbjct 6229 AAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCTGACACTATTGAAAAT 6170 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| || ||||| |||||||| || || ||| ||| || | ||||| Sbjct 6169 GTCAAAGCTAAA-ATCCAAGATAAAGAAGGTATCCCACCAGACCAGCAACGATTGATCTT 6111 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || |||||||| ||||| ||||| | |||||| ||||||||||| |||| || || || Sbjct 6110 TGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAACATCCAAAAGGAATC 6051 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || || ||||||| Sbjct 6050 CACCCTTCATCTCGTATTACGACTTCG 6024 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| || || || | ||| Sbjct 5317 AAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGGATACCATTGAAAAT 5258 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| |||||||| |||||||| || || || ||| | | || || Sbjct 5257 GTAAAAGCTAAA-ATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAACGGTTGATTTT 5199 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || ||||||||||| | |||||| ||||||||||| | |||||||| || Sbjct 5198 TGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACATTCAGAAAGAATC 5139 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| || ||||||| Sbjct 5138 CACCCTCCATCTTGTACTGCGACTTCG 5112 Score = 107 bits (118), Expect = 5e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || ||||| || || |||||||| || || || ||| ||||| || ||||| Sbjct 5536 ACTGGTAAAACAATTACATTGGAAGTTGAGCCATCAGATACAATCGAAAATGTGAAAGCC 5477 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| |||||||| ||||||||||| || || || || | || || ||||| || Sbjct 5476 AAA-ATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAGCGATTGATTTTTGCCGGTAA 5418 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 |||||||||||||| | || ||| ||||||||| |||| ||||| || ||||| || Sbjct 5417 ACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAACATCCAAAAAGAATCCACTCTCCA 5358 Query 206373 CCTTGTTTTGAGACTTCG 206390 ||||| || | ||||| Sbjct 5357 TCTTGTGTTACGTCTTCG 5340 >seq1658 Length=21299 Score = 118 bits (130), Expect = 3e-21 Identities = 157/214 (73%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| || || |||||||||||| || ||||| | Sbjct 17185 TTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATCGGACACTAT 17244 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| || ||||| |||||||| || || || ||| | Sbjct 17245 TGAAAATGTCAAAGCTAAA-ATCCAAGACAAAGAAGGTATCCCACCAGATCAGCAACGGT 17303 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | ||||| ||||||||||| ||||| ||||| | |||||| | ||||||||| | || | Sbjct 17304 TGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACAACATTCAAA 17363 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| || || ||||| ||||| || | ||||| Sbjct 17364 AAGAATCCACCCTTCATCTTGTATTACGGCTTCG 17397 Score = 118 bits (130), Expect = 3e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| ||||| |||||||||||| || || || | ||| Sbjct 18106 AAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGGATACCATTGAAAAT 18165 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||| |||||||| |||||||| || || || ||| | | || || Sbjct 18166 GTAAAAGCTAAA-ATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAACGGTTGATTTT 18224 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||||| || || ||||||||||| | |||||| ||||||||||| | |||||||| || Sbjct 18225 TGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACATTCAGAAAGAATC 18284 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || ||||| || ||||||| Sbjct 18285 CACCCTCCATCTTGTACTGCGACTTCG 18311 Score = 111 bits (122), Expect = 4e-19 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| ||| || | || || ||||| || || |||||||| || || || Sbjct 17865 CAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCAGAT 17924 Query 206233 ACAGTCGAATCAGT--AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 ||| ||||| || ||||| ||| |||||||| ||||||||||| || || | Sbjct 17925 ACAATCGAAAATGTGAAAAGCCAAA-ATTCAAGATAAAGAAGGAATCCCACCAGATCAGC 17983 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | || | || || ||||| || |||||||||||||| | || ||| ||||||||| Sbjct 17984 AGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAACA 18043 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| ||||| || ||||| || ||||| ||| | ||||| Sbjct 18044 TCCAAAAAGAATCCACTCTCCATCTTGTGTTGCGTCTTCG 18083 Score = 105 bits (116), Expect = 2e-17 Identities = 154/214 (72%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| | || || ||||| || ||||||||||| || || || || | Sbjct 17642 TTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATCAGATACCAT 17701 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 ||| || ||||| ||| || || || |||||||||||| || || ||| | Sbjct 17702 TGAAAACGTGAAAGCTAAA-ATCCAGGACAAAGAAGGAATTCCACCAGATCAACAACGTT 17760 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | || || ||||| || || ||||||||||| || || ||| ||||| || |||| | Sbjct 17761 TGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAATATCCAAA 17820 Query 206357 AAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||| |||||||| || ||||| ||| | ||||| Sbjct 17821 AAGAATCTACTCTCCATCTTGTGTTGCGTCTTCG 17854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181794967613226