Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1705 134 1e-26 seq1489 134 1e-26 seq1658 125 7e-24 >seq1705 Length=717327 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||| || |||| ||| || |||||| | ||||||||||| | Sbjct 502622 GATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCA 502563 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||||| |||||||| || || ||||||||||| |||||| ||||| Sbjct 502562 AAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACA 502503 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||||| ||||| | || | ||||||||||||| ||| || Sbjct 502502 TTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTG 502443 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 502442 ACGAAAATTTGCAT 502429 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| ||||||||||| ||| || ||||| | Sbjct 502871 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 502812 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | | || | || || |||||||| || || |||||||| Sbjct 502811 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 502752 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | || |||||||| | || | Sbjct 502751 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 502692 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| |||||||| ||| || ||||| Sbjct 502691 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || | ||| | | | || |||||||| || || || || |||| || || | Sbjct 502415 CGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCA 502356 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||||||||| | |||| | || || |||||||| || || |||||||| Sbjct 502355 TCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 502296 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | ||| | ||||||| ||||| ||||| | || | Sbjct 502295 TCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATG 502236 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| ||||| | ||||| ||||| Sbjct 502235 GTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 ||||| || | ||| | | || |||||||| ||||| || || | | ||| |||| Sbjct 502187 CGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATG-TACGGCC 502129 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | | || | || || |||||||| || || |||||||| Sbjct 502128 ATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTT 502069 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| |||||| ||||| | ||| | || || | || || ||||| | || | Sbjct 502068 ATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAAT 502009 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| | ||||| | ||||| ||||| Sbjct 502008 AGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || | ||| | | | || || ||||| |||||||| ||| || || || | Sbjct 501959 CGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCA 501900 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | || || || | | |||| | || || || ||||| || || ||||||||| Sbjct 501899 TCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTA 501840 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||| || | || |||||||| | || | Sbjct 501839 TCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATG 501780 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||||| | |||||| ||||| Sbjct 501779 GTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 >seq1489 Length=23360 Score = 134 bits (148), Expect = 1e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||| |||||||| || |||| ||| || |||||| | ||||||||||| | Sbjct 5367 GATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCCAACTGTTTACCGGCA 5426 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || | ||||| |||||||| || || ||||||||||| |||||| ||||| Sbjct 5427 AAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACA 5486 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||||| ||||| | || | ||||||||||||| ||| || Sbjct 5487 TTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTG 5546 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 5547 ACGAAAATTTGCAT 5560 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| ||||||||||| ||| || ||||| | Sbjct 5118 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 5177 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | | || | || || |||||||| || || |||||||| Sbjct 5178 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 5237 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | || |||||||| | || | Sbjct 5238 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 5297 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| |||||||| ||| || ||||| Sbjct 5298 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || | ||| | | | || |||||||| || || || || |||| || || | Sbjct 5574 CGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCA 5633 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||||||||| | |||| | || || |||||||| || || |||||||| Sbjct 5634 TCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 5693 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||||| | ||| | ||||||| ||||| ||||| | || | Sbjct 5694 TCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATG 5753 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || |||| ||||| | ||||| ||||| Sbjct 5754 GTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGA 131967 ||||| || | ||| | | || |||||||| ||||| || || | | ||| |||| Sbjct 5802 CGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATG-TACGGCC 5860 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 |||||| || |||||||| | | | || | || || |||||||| || || |||||||| Sbjct 5861 ATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTT 5920 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| |||||| ||||| | ||| | || || | || || ||||| | || | Sbjct 5921 ATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAAT 5980 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||||||| | ||||| | ||||| ||||| Sbjct 5981 AGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || | ||| | | | || || ||||| |||||||| ||| || || || | Sbjct 6030 CGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCA 6089 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | || || || | | |||| | || || || ||||| || || ||||||||| Sbjct 6090 TCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTA 6149 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||| || | || |||||||| | || | Sbjct 6150 TCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATG 6209 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||||| | |||||| ||||| Sbjct 6210 GTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 >seq1658 Length=21299 Score = 125 bits (138), Expect = 7e-24 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | || |||||||| |||||||| || |||| ||| || | Sbjct 18077 CGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCA 18018 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||||||||| | | || | ||||| |||||||| || || ||||||||| Sbjct 18017 TCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTA 17958 Query 132029 TCGGTAATTTT-TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || |||||| ||||| | ||| | ||||| | ||||| ||||| | || | Sbjct 17957 TCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAAT 17898 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| ||| || | ||| || ||||| Sbjct 17897 TGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | || ||||| ||||||||||| ||| || ||||| | Sbjct 18305 CGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCA 18246 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | | || | || || |||||||| || || |||||||| Sbjct 18245 TCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 18186 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | ||||| | || |||||||| | || | Sbjct 18185 TCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTGATT 18126 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| |||||||| ||| || ||||| Sbjct 18125 GTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | || |||||||| || || || || |||| || | | Sbjct 17848 CGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCA 17789 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||||| | | || | ||| ||||||||||| || || |||||||| Sbjct 17788 TCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTG 17729 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | ||| | ||||| | ||||| ||||| | || | Sbjct 17728 TCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATG 17669 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || |||| ||||| | ||||| |||||| Sbjct 17668 GTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || || | ||| | | | || ||||||||||||||||| || || || || | Sbjct 17391 CGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCA 17332 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || | || || |||| | |||| | || || |||||||| || || |||||||| Sbjct 17331 TCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTG 17272 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | ||| | ||| || | || |||||||| | || | Sbjct 17271 TCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATG 17212 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| | ||||| | ||||| ||||| Sbjct 17211 GTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476601036266160