Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1658 123 2e-23 seq1705 116 3e-21 seq1489 116 3e-21 >seq1658 Length=21299 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||| ||||| |||||||| ||||| || || Sbjct 17634 ATGCAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATCA 17693 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | |||||| ||||| ||||||||||| | || |||||| Sbjct 17694 GATACCATTGAAAACGTGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATCAA 17753 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | |||| ||| || |||||||| |||||| | ||| || | ||||| || Sbjct 17754 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAAT 17813 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || |||||||||||||| || ||| | || ||| Sbjct 17814 ATCCAAAAAGAATCTACTCTCCATCTTGTGTTG 17846 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| ||||| || ||||| || |||||||| ||||| ||||| Sbjct 17176 AATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATC 17235 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || ||| ||||| ||||||||||| | || ||||| Sbjct 17236 GGACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCA 17295 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| || | || | ||| || || ||||| || ||| | |||| || |||||||| Sbjct 17296 GCAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACAA 17355 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATT 106471 ||| ||||||||||| || || ||| | ||||| Sbjct 17356 CATTCAAAAAGAATCCACCCTTCATCTTGTATT 17388 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || ||||| |||||||| || || || ||| ||||| ||||| Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 18150 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 18151 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 18210 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| || | |||| ||| || |||||||| |||||| ||| || |||||||||| Sbjct 18211 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 18270 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || |||||||| || || ||| | ||| || Sbjct 18271 ATTCAGAAAGAATCCACCCTCCATCTTGTACTG 18303 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||| ||| | | || | ||| |||||||||||||||||| | |||| || |||| Sbjct 17063 GATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGAT 17122 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||||| || ||||||||||||||| | ||||| |||||| | |||| || ||| Sbjct 17123 TACAATATTCAAAAAGAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGA 17176 >seq1705 Length=717327 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||| |||||||||||||| ||||| || || | Sbjct 502201 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 502260 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | |||||| |||||| ||||||||||| | || ||||| Sbjct 502261 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 502320 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| || | || | ||| || ||||| || |||||| ||| || | ||||| || Sbjct 502321 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAAT 502380 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||||||||| || || ||| | || || Sbjct 502381 ATCCAAAAAGAATCCACCCTCCATCTTGTCTT 502412 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || ||||| |||||||| || || || ||| ||||| ||||| Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 502716 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 502717 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 502776 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| || | |||| ||| || |||||||| |||||| ||| || |||||||||| Sbjct 502777 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 502836 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || |||||||| || || ||| | ||| || Sbjct 502837 ATTCAGAAAGAATCCACCCTCCATCTTGTACTG 502869 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || |||||||||||||| || |||||||| ||||| ||||| Sbjct 501744 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 501803 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || ||| ||||| || |||||||| | || || || Sbjct 501804 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 501863 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | || | ||| || || ||||| || ||| | |||| || ||||||||| Sbjct 501864 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 501923 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATT 106471 ||| ||||| ||||| || || ||| | ||||| Sbjct 501924 CATCCAAAAGGAATCCACCCTTCATCTCGTATT 501956 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 501973 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCG 502032 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| |||||| || |||||||| | || ||||| Sbjct 502033 GACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAG 502092 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | | |||| ||| || |||||| | |||||| | | | ||| ||||| | Sbjct 502093 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTAT--CTGATTATA 502150 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| |||||||||||||| || ||| | || ||| | |||| || || Sbjct 502151 ACATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 502199 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || || |||||||| || || ||||| ||||| || || Sbjct 502429 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 502488 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | |||||| |||||| || |||||||| | || ||||| Sbjct 502489 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 502548 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | |||| ||| || ||||| || |||||| ||| || | ||||||||| Sbjct 502549 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 502608 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||||||||| || || ||| | || || Sbjct 502609 ATCCAAAAAGAATCCACTCTCCATCTTGTGTT 502640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||| ||| | | || | ||| |||||||||||||||||| | |||| || |||| Sbjct 501631 GATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGAT 501690 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || || ||||| ||||||||| | ||||| |||||| | |||| || ||| Sbjct 501691 TATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGA 501744 >seq1489 Length=23360 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||||||||| |||||||||||||| ||||| || || | Sbjct 5788 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 5729 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | |||||| |||||| ||||||||||| | || ||||| Sbjct 5728 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 5669 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| || | || | ||| || ||||| || |||||| ||| || | ||||| || Sbjct 5668 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAAT 5609 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||||||||| || || ||| | || || Sbjct 5608 ATCCAAAAAGAATCCACCCTCCATCTTGTCTT 5577 Score = 105 bits (116), Expect = 5e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| || || ||||| |||||||| || || || ||| ||||| ||||| Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 5273 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| ||||||||||| | || ||||| Sbjct 5272 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 5213 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| || | |||| ||| || |||||||| |||||| ||| || |||||||||| Sbjct 5212 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5153 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 || || |||||||| || || ||| | ||| || Sbjct 5152 ATTCAGAAAGAATCCACCCTCCATCTTGTACTG 5120 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||||||||||| || |||||||||||||| || |||||||| ||||| ||||| Sbjct 6245 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 6186 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || ||| | || ||| ||||| || |||||||| | || || || Sbjct 6185 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 6126 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | || | ||| || || ||||| || ||| | |||| || ||||||||| Sbjct 6125 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 6066 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATT 106471 ||| ||||| ||||| || || ||| | ||||| Sbjct 6065 CATCCAAAAGGAATCCACCCTTCATCTCGTATT 6033 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| || ||||| ||||| ||||| ||||| ||||| Sbjct 6016 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCG 5957 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | |||||| |||||| || |||||||| | || ||||| Sbjct 5956 GACACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAG 5897 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGCGATTACA 106437 ||| | | |||| ||| || |||||| | |||||| | | | ||| ||||| | Sbjct 5896 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTAT--CTGATTATA 5839 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||| |||||||||||||| || ||| | || ||| | |||| || || Sbjct 5838 ACATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 5790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || || |||||||| || || ||||| ||||| || || Sbjct 5560 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 5501 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | | | | |||||| |||||| || |||||||| | || ||||| Sbjct 5500 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5441 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | |||| ||| || ||||| || |||||| ||| || | ||||||||| Sbjct 5440 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 5381 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||||||||| || || ||| | || || Sbjct 5380 ATCCAAAAAGAATCCACTCTCCATCTTGTGTT 5349 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 106374 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGAT 106433 ||||| ||| | | || | ||| |||||||||||||||||| | |||| || |||| Sbjct 6358 GATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCGAACTTTGTCCGAT 6299 Query 106434 TACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || || || ||||| ||||||||| | ||||| |||||| | |||| || ||| Sbjct 6298 TATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTACGTGGTGGA 6245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402321234813248