Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq1705 109 5e-19 seq1658 109 5e-19 seq1489 109 5e-19 >seq1705 Length=717327 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||||||||||| ||| ||||| | || |||| ||||| || ||||| Sbjct 501935 TCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAG 501876 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| || |||||||| | || | | || || || ||| ||| || || | | | Sbjct 501875 ATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGGAT-TTTAGCTTTGACATT 501817 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | |||||| |||| || || |||||||| ||||| |||||||| Sbjct 501816 TTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCAC 501757 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 501756 GAAAATTTGCATTC 501743 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 35503 TTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| ||||||||||| | | || || | ||| | || || || |||||||||| Sbjct 502891 TTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGT 502832 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||||| ||| || || | || |||| || ||||| ||||| |||||||| ||||| | Sbjct 502831 AATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGAT 502772 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTC 35680 | | || | | || |||| | ||| ||| || || | | || | | || || Sbjct 502771 CTGGTGGGATACCTTCTTTGT-CTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGAT 502713 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | |||||| |||| ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 502712 GGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||| | ||| | || || ||||| ||||||||||| | Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || |||| ||| ||||| ||||| ||||| |||||||| || | || Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||| | ||| ||| || |||| | || | | || || | || || Sbjct 502535 ATTC-CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAAC 502477 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| |||||||| || || || || ||||| Sbjct 502476 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | ||| |||||||| || ||| ||||||||||| || ||||||| Sbjct 501745 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCGG 501686 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| | || || | || || || ||||| ||||| || ||||| || | | Sbjct 501685 ACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTG 501626 Query 35628 GAA 35630 ||| Sbjct 501625 GAA 501623 >seq1658 Length=21299 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Minus Query 35503 TTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| ||||||||||| | | || || | ||| | || || || |||||||||| Sbjct 18325 TTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGT 18266 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||||| ||| || || | || |||| || ||||| ||||| |||||||| ||||| | Sbjct 18265 AATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGAT 18206 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTC 35680 | | || | | || |||| | ||| ||| || || | | || | | || || Sbjct 18205 CTGGTGGGATACCTTCTTTGT-CTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGAT 18147 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | |||||| |||| ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 18146 GGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || || || | ||| | || || ||||||||||||||||| | | Sbjct 17403 CCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGAC 17344 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || ||||| | || |||| ||||| || ||||| |||||||| ||||| || | || Sbjct 17343 AAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 17284 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||||| ||| ||| || || | | || | | ||||| | |||||| Sbjct 17283 ATACCTTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCAC 17225 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| || || |||||||| || || ||||| ||||| || ||||||| Sbjct 17224 TTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCATTC 17175 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||| | ||| | || || ||||| ||||||||||| | Sbjct 18089 CCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 18030 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || |||| ||| ||||| ||||| ||||| |||||||| || | || Sbjct 18029 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 17970 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC--TTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | || ||| | ||| ||| || |||| | || | | || || | || | Sbjct 17969 ATTC-CTTCTTTATCTTGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAA 17911 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | |||| || || |||||||| |||||||| || || ||||| ||||| Sbjct 17910 CTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | ||| |||||||| || ||| || |||||||| |||||||||| Sbjct 17177 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCTTTTTGAATATTGTAATCGG 17118 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| | || || | || || || ||||| ||||| || ||||| || | | Sbjct 17117 ACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTG 17058 Query 35628 GAA 35630 ||| Sbjct 17057 GAA 17055 >seq1489 Length=23360 Score = 109 bits (120), Expect = 5e-19 Identities = 168/236 (71%), Gaps = 3/236 (1%) Strand=Plus/Plus Query 35503 TTTA-TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGT 35561 |||| ||||||||||| | | || || | ||| | || || || |||||||||| Sbjct 5098 TTTAGTTTCCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGT 5157 Query 35562 AATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGT 35621 |||||| ||| || || | || |||| || ||||| ||||| |||||||| ||||| | Sbjct 5158 AATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGAT 5217 Query 35622 CCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTC 35680 | | || | | || |||| | ||| ||| || || | | || | | || || Sbjct 5218 CTGGTGGGATACCTTCTTTGT-CTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGAT 5276 Query 35681 GATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | |||||| |||| ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 5277 GGTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 109 bits (120), Expect = 5e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||||||||||| ||| ||||| | || |||| ||||| || ||||| Sbjct 6054 TCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTCCAATTGCTTTCCAGCAAAG 6113 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| || |||||||| | || | | || || || ||| ||| || || | | | Sbjct 6114 ATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTTGGAT-TTTAGCTTTGACATT 6172 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | |||||| |||| || || |||||||| ||||| |||||||| Sbjct 6173 TTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCAC 6232 Query 35725 AAATATCTGCATTC 35738 || || ||||||| Sbjct 6233 GAAAATTTGCATTC 6246 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||||| | ||| | || || ||||| ||||||||||| | Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 |||||||| | || |||| ||| ||||| ||||| ||||| |||||||| || | || Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | || ||| | ||| ||| || |||| | || | | || || | || || Sbjct 5454 ATTC-CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAAC 5512 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| |||||||| || || || || ||||| Sbjct 5513 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||||| | ||| |||||||| || ||| ||||||||||| || ||||||| Sbjct 6244 TTCCACCACGTAGACGCAATACCAAATGCAATGTAGATTCCTTTTGAATATTATAATCGG 6303 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| ||||| | || || | || || || ||||| ||||| || ||||| || | | Sbjct 6304 ACAAAGTTCGACCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGTTGCTGATCTGGTG 6363 Query 35628 GAA 35630 ||| Sbjct 6364 GAA 6366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783986826480