Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1631 159 5e-34 seq1399 154 2e-32 >seq1631 Length=21602 Score = 159 bits (176), Expect = 5e-34 Identities = 384/581 (66%), Gaps = 19/581 (3%) Strand=Plus/Minus Query 161166 AACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAAC 161225 |||| ||||| || || || |||| ||||| |||||||| |||||||| ||||| | Sbjct 13732 AACCGGATGAAATATATAATCTAGCCGCACAAAGTCATGTAAAAGTATCGTTCGATCTAA 13673 Query 161226 CTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTC 161285 ||||||||| || | |||||| || ||| | || || ||||||| || |||| Sbjct 13672 GTGAATATACTGCCAATGTTGATGCGCTTGGAGCATTACGATTATTGGATGCCATTCGAA 13613 Query 161286 TCCTAGGTATGACAGATA-----GGGTCCGTA----------TCTACCAGGCATCCACCA 161330 | ||| || |||| || || |||| || || || Sbjct 13612 CGGCAAATATAACCGATACAAATGGAAAATTAAAAATGAAATTCTATCAAGCCAGTACTT 13553 Query 161331 GTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCAC 161390 || |||||||| |||||||| || || ||||||||||| ||||| |||| Sbjct 13552 CAGAATTGTATGGCAAAGTACAAGAAGTGCCTCAACGTGAAACAACACCATTCTATCCAC 13493 Query 161391 GATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGA 161450 |||| ||||| || || || ||| | | ||||||||||| || || | || Sbjct 13492 GATCACCATACGGTGTGGCAAAATCATTCGCTTATTGGATTGTTGTCAATTATCGTGAAG 13433 Query 161451 GTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTG 161510 ||||| ||| ||| | |||||| |||||||| ||||| ||||| ||||| |||| Sbjct 13432 CTTATGAAATGTTTGCCGTCAATGGTATACTATTCAATCATGAATCACCTCGACGCGGTG 13373 Query 161511 AGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGG 161570 | || || || || ||||| ||||| | | | | | ||| | | || | Sbjct 13372 AAACATTTGTCACTCGTAAAATTAC-ACGTGTGTTGCGAAAATTCTCCTAAACCGGCAAG 13314 Query 161571 ATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATG 161630 | | | | | | |||||||| | |||| |||||||||||| || || || |||| Sbjct 13313 AATATATTGAATTGGGTAATCTGGATTCAAAACGAGATTGGGGCCACGCACGTGATTATG 13254 Query 161631 TGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAG 161690 |||| || |||||| | |||||||||||||||| ||| || || | ||| || || || | Sbjct 13253 TGGAAGCAATGTGGCTAATGTTACAACAGGAAAATCCAGAAGATTTTGTTATCGCAACTG 13194 Query 161691 GTAAAGAGTATTCAGTGAAGGACTTTGTAGAGGCATCTGCT 161731 || ||| ||||||| || ||||| || ||||||| Sbjct 13193 GTGAAGCACATTCAGTTCGTGAATTTGTCGA---ATCTGCT 13156 >seq1399 Length=306096 Score = 154 bits (170), Expect = 2e-32 Identities = 382/581 (66%), Gaps = 18/581 (3%) Strand=Plus/Plus Query 161166 AACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAAC 161225 |||| ||||| || || || |||| ||||| |||||||| |||||||| ||||| | Sbjct 139150 AACCGGATGAAATATATAATCTAGCCGCACAAAGTCATGTAAAAGTATCGTTCGATCTAA 139209 Query 161226 CTGAATATACAGCACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTC 161285 ||||||||| || | |||||| || ||| | || || ||||||| || |||| Sbjct 139210 GTGAATATACTGCCAATGTTGATGCGCTTGGAGCATTACGATTATTGGATGCCATTCGAA 139269 Query 161286 TCCTAGGTATGACAGATA-----GGGTCCGTA----------TCTACCAGGCATCCACCA 161330 | ||| || |||| || || |||| || || || Sbjct 139270 CGGCAAATATAACCGATACAAATGGAAAATTAAAAATGAAATTCTATCAAGCCAGTACTT 139329 Query 161331 GTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAACAACACCTTTCTACCCAC 161390 || |||||||| |||||||| || || ||||||||||| ||||| |||| Sbjct 139330 CAGAATTGTATGGCAAAGTACAAGAAGTGCCTCAACGTGAAACAACACCATTCTATCCAC 139389 Query 161391 GATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTGTAAAGAACTACAGAGAGA 161450 |||| ||||| || || || ||| | | ||||||||||| || || | || Sbjct 139390 GATCACCATACGGTGTGGCAAAATCATTCGCTTATTGGATTGTTGTCAATTATCGTGAAG 139449 Query 161451 GTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTCACCACGACGGGGTG 161510 ||||| ||| ||| | |||||| || ||||| ||||| ||||| ||||| |||| Sbjct 139450 CTTATGAAATGTTTGCCGTCAATGGTATACTTTTCAATCATGAATCACCTCGACGCGGTG 139509 Query 161511 AGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAGTACAGGACTACAGG 161570 | || || || || ||||| ||||| | || | | ||| | | || | Sbjct 139510 AAACATTTGTCACTCGTAAAATTACACGCGGTGTTGCGAAAATTCTCCTAAACCGGCAAG 139569 Query 161571 ATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCATGCTGAAGACTATG 161630 | | | | | | |||||||| | |||| | |||||||||| || || || |||| Sbjct 139570 AATATATTGAATTGGGTAATCTGGATTCAAAAAGAGATTGGGGCCACGCACGTGATTATG 139629 Query 161631 TGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTATGTGATTGCCACAG 161690 |||| || |||||| | |||||||||||||||| ||| || || | ||| || || || | Sbjct 139630 TGGAAGCAATGTGGCTAATGTTACAACAGGAAAATCCAGAAGATTTTGTTATCGCAACTG 139689 Query 161691 GTAAAGAGTATTCAGTGAAGGACTTTGTAGAGGCATCTGCT 161731 || ||| ||||||| || ||||| || ||||||| Sbjct 139690 GTGAAGCACATTCAGTTCGTGAATTTGTCGA---ATCTGCT 139727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729914034251280