Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1705 361 4e-95 seq1157 111 1e-19 >seq1705 Length=717327 Score = 361 bits (400), Expect = 4e-95 Identities = 633/914 (69%), Gaps = 22/914 (2%) Strand=Plus/Minus Query 43685 GAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTAC 43744 |||||||| | | ||||| ||||||||||||||||||||||||| ||| ||||| Sbjct 626336 GAAAATCCAAATCGTTTTGTTTTGTTTCCAATTCAATATCATGACATTTGGATCATGTAT 626277 Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 |||||||| | || ||||| ||||||| |||||||| ||| | | | || | || Sbjct 626276 AAAAAAGCTGAAGCATCATTCTGGACAGTTGAAGAAGTGGATCTAAGTCGTGATATTGCC 626217 Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 ||||||| | ||| || || | ||||||||||| || | || ||||| |||||| Sbjct 626216 CATTGGAATCAATTGAATGCAAATGAAAAACATTTCATTACACATGTATTGGCATTTTTT 626157 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924 ||||| ||||| || || |||||||||||| ||| || ||| | || || ||| Sbjct 626156 GCTGCAAGCGATGGTATTGTCAATGAAAATCTGGCCGAACGTTTTATTCGTGATGTACAA 626097 Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984 ||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| ||| Sbjct 626096 ATACCAGAAGCACGTTGTTTTTATGGCTTTCAAATTGCCATTGAAAATGTTCATTCAGAA 626037 Query 43985 ATGTA--CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGT 44042 ||||| || | | |||| |||| || | ||| | || | || | | Sbjct 626036 ATGTATTCATTAT--TGATCAATACATATGTATCGGATCGTAGTGAACAAGATTTTCTAT 625979 Query 44043 TTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGC----CCTTAAA 44098 | ||||| ||| | ||||| | || | ||||| | ||||| | || | Sbjct 625978 TCAATGCCATACGTAATTTACCTTGTGTAGAAAAAAAAGCTAAATGGGCTATACGTTGGA 625919 Query 44099 ---TGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 |||| ||||| | | | || | ||||| | | || ||||||| || ||| Sbjct 625918 CCCAGGAT-GATTCA---GTTACATTCGCTGAACGTTTGATTGCATTTGCAGCCGTTGAA 625863 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 || || || ||||| || || ||||| || || |||||| | || ||||| || | ||| Sbjct 625862 GGAATCTTTTTTTCTGGTTCATTTGCCGCAATTTTTTGGCTTAAAAAACGTGGCCTCATG 625803 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTT 44275 ||||| | || ||||| ||||| || || ||||||||||| |||||||| |||||| Sbjct 625802 CCTGGTCTTACATTTTCGAATGAATTGATTTCACGTGATGAAGGATTACATTGTGATTTT 625743 Query 44276 GCTTGCTTGTTACTT--GGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAG 44333 || ||||| || || |||| | | | || || ||| | |||| | Sbjct 625742 GCATGCTTATTGTTTCACCATAT-TCGTA----ATCGTCCATCACCACAACGAATTGTTG 625688 Query 44334 ATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAA 44393 ||||| || | || || ||| ||| ||||| ||||| |||| |||||||| || Sbjct 625687 ATATTATTATCGATGCTGTATCGATTGAACAGGAATTCTTGACCGATGCATTACCAGTTT 625628 Query 44394 ATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTT 44453 || || || |||||| | || ||| | | ||||||||||| ||||||||||| Sbjct 625627 CATTGATTGGCATGAATTCAAAATTAATGTCCGATTATATTGAATATTGTGCAGATCGTT 625568 Query 44454 TACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGG 44513 || | | ||| || ||| || ||||| |||| || || ||||| ||||||| Sbjct 625567 TATTGGTAGAATTGAATTGTGAAAAACATTATAAAACGGCCAATCCATTTGAATTTATGG 625508 Query 44514 AAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGC 44573 || | ||||| |||||||| ||| |||| ||||| |||||||| |||| |||||||| Sbjct 625507 AACAAATTTCATTGGAAGGTAAATCAAATTTTTTCGAAAAACGTGTTGCCGAATATCAAA 625448 Query 44574 GAATGGGCGTCATG 44587 || || |||||| Sbjct 625447 AAAGTGGTGTCATG 625434 >seq1157 Length=991128 Score = 111 bits (122), Expect = 1e-19 Identities = 432/675 (64%), Gaps = 12/675 (2%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 || |||||| | || |||| || ||||| ||| || | || | || || || | || Sbjct 646691 ATATTTCGTCGGGCTTTTGCATCTCGTGTATTTCCTCCTGAGATAATCGAAGAACTCGGT 646632 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 ||||||||||||||| || | | ||||| ||||| || || || || || || Sbjct 646631 ATAAAACATGTTCGTGGAATTCTTTTGTATGGTCCACCTGGAACGGGCAAGACTTTGATG 646572 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || ||| || || | ||| | | | | || ||||| || ||||| ||| | Sbjct 646571 GCTAGACAAATTGGCAAAATGTTGAACGCTCGTGAACCAAAAATCGTTAATGGACCTCAG 646512 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| | |||||||| || |||| |||| || | || ||||||| || ||| Sbjct 646511 ATATTAGACAAATATGTGGGCGAATCCGAAGCGAACATTCGTAAATTGTTTGAAGATGCT 646452 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 ||||| ||||| | | | | || || || | | ||||| || || | ||||| Sbjct 646451 GAAGAGGAACAGACAAGAATGGGTATAAATAGCGGTCTACACATAATTATTTTCGATGAG 646392 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT--GTAAATGG--AGTACATGACACT 19626 | || || ||||| || |||| || ||| | | || | ||| ||||||||| Sbjct 646391 ATCGATGCTATCTGCAAAGCTCGAGGATCGATGGCCGGAACATCGGCAGTTCATGACACT 646332 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 || || |||||| | || | ||| | || || ||| | |||| || || ||||| Sbjct 646331 GTCGTTAATCAATTGTTGGCCAAAATTGATGGCGTTGATTCGTTGAACAACATATTAGTC 646272 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 || || |||||||| | || | || ||| || || | ||||| ||||| | Sbjct 646271 ATCGGTATGACTAACCGCAAAGACATGATTGACGAAGCATTGCTTCGACCAGGTCGACTT 646212 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 ||| | |||| ||||| | | || ||||| ||| ||||| |||| || || || Sbjct 646211 GAAGTGCAGATGGAAATCAGTCTTCCGAATGAAGATGGCCGTGTTCAAATATTGAATATT 646152 Query 19807 CATACATCAACCATGCGACAA---AATAACCTTTTAAATGACGATGTAGATCTAGAAGAA 19863 || || | ||||| ||| || || || | | ||||| | | ||||| Sbjct 646151 CACACTAGTAAAATGCGCCAATACAAAAAAATTGCACCT---GATGTCAACATTCAAGAA 646095 Query 19864 ATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGCC 19923 | ||| || || ||||| | | ||| |||||| |||| || |||| | || || Sbjct 646094 TTGGCAACGTTGACTAAAAATTTTTCCGGTGCAGAAATTGAAGGCCTAGTTCGAGCTGCT 646035 Query 19924 CAATCAATTGCAATG 19938 ||||| | ||| ||| Sbjct 646034 CAATCGACTGCTATG 646020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447736144530