Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1179 161 1e-34 seq1123 132 6e-26 >seq1179 Length=350002 Score = 161 bits (178), Expect = 1e-34 Identities = 425/641 (66%), Gaps = 16/641 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||||| ||| ||||||||||| |||||||||| || || |||||||| || || Sbjct 62902 GTAAATGTTTGATGTATATGGTTCAAATGATTCATTATTGCCTAAAATTTGTGCTGTAGA 62843 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||||||||||||||||| | | | ||| || || | ||| || | || | | Sbjct 62842 TGCTGTTGGCATTGGTGCAACAAGTAAACTATTTCGTATACCATTTTGAGCAATTTTTGC 62783 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 || | ||| ||| || | | | || ||||| | |||| |||| ||| | || Sbjct 62782 TTTCAATTCATTCCAATCCCAAAGATCAG-TTGGTGTGCGGTTCC-ACATATCATATTGT 62725 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | |||| || | || || || ||| | |||||||| | || ||||||| Sbjct 62724 AGAATACCTTTCGATACTGGTGATCCTTCATATGTTTCATATGGGCCAAATTTTTCAGCC 62665 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 |||||||| || || |||| | | | ||| || |||||||| || || |||||| Sbjct 62664 AATTCACAACTTGCTTCCAATGCACCATAATAAATTGTTTCAAATATTTGAATATTCATT 62605 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 | || ||||| ||| ||| || || || | ||| |||| || | |||| Sbjct 62604 TGTTTAGCTTCGAGACTTTCATATGGATAACGCATTAAGTTGAATGCATCGGCTAAACCT 62545 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGAC--TTTCGCG--CAGTCTCAAC 111120 || ||||| | ||||| |||| || || | ||| || |||||| | || | Sbjct 62544 TGTACACCAATTCCAATCGGTCGATGACGTAGATTCGAACGTTTCGCTTCCGGT----AA 62489 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||||||||||| || || || | | ||| | |||||| || | | || ||||| Sbjct 62488 TGGATAAAAATTACTATCGATAATTTTGTTCAAATTTTTTGTCATTACTTTAACAATTTC 62429 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 | ||||| ||||||||||| || | || | || |||| | ||| | | || Sbjct 62428 TTTGAGTTTATCATAATCAAATGTAAAAAGCTTTGGATCGACAAAACGTGGCAATGAAAT 62369 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAATTTCTGTA 111298 ||| |||||||| ||||| || | ||||| || | || || || | |||||| ||| Sbjct 62368 TGAAGCCAAATTACAAACGGCAATTTCATCAGCTGA--TGAATATTCAACAATTTCCGTA 62311 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 || | || |||| || || || |||||||| | ||| || Sbjct 62310 CAAAGATTTGAACATTTGATGGTTCCCAAATTTTGTTGATT 62270 >seq1123 Length=366939 Score = 132 bits (146), Expect = 6e-26 Identities = 457/704 (65%), Gaps = 18/704 (3%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 110765 ||| || || |||| ||||||||||| ||||||| || ||||||| ||||||| || | Sbjct 23518 GTATATATTACTTGTATATGGTTCAAAAGATTCATTGTT-CCCAAGAATTTGTGCTGTCG 23576 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCG 110823 | ||||| |||||||| || | | | ||| || || | ||| | | ||| || || Sbjct 23577 AAGCTGTAGGCATTGGAGCTACAAGCAAACTATTTCGTATACCATGTT--TTGCAATTCG 23634 Query 110824 TTCCTTGAGAACATCCCAGT-CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 | || | | | | ||| | | | || |||||| || | |||||||||||||| Sbjct 23635 AGCTTTCAAATCGTTCCAATTCCAAAGAGATGTTGGTTG-ACGATTCCACATGTCAAACT 23693 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | | || || | || || || ||| | |||||||| | ||| | ||||| Sbjct 23694 GTAGAATACTTTTAGATACTGGTGATCCTTCATACGTTTCATATGGACCATTTCGTTCAG 23753 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 |||||||||| || || || | | | | ||| || |||||||| || || ||| | Sbjct 23754 CCAATTCACAACTTGCTTCTAATGCACCATAATAAATTGTTTCAAAAATCTGAATATTGA 23813 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | ||||| || || ||| || || | ||| ||| |||| || | || Sbjct 23814 GCAATCGAGCTTCTTCACTTTCGTATGGATAACGCATTAGAATGAATGCATCGGCCAAAC 23873 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGG 111122 |||||||||| | ||| || |||| || || | ||| || | ||| || | |||| Sbjct 23874 CTTGAACACCGATACCTATCGGTCGATGACGAAGATTCGAATATCGTGCTTCCGGTACGG 23933 Query 111123 GATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTT-----GTGAT 111177 ||||| || | ||||| ||| ||||||||| || |||| |||| ||| Sbjct 23934 GATAATAAGTAACATCAATAACTTTGTTTAGATTACGAGTGACAA-CTTTAACAATCGAT 23992 Query 111178 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGC 111237 ||| | ||||| | ||||| | | ||| | | | || ||| | || | || Sbjct 23993 TTC----AATTTTTTAAAATCATAGATTCGATTTTTATGATCAACAAATTTGTTCAAAGC 24048 Query 111238 GATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGT 111297 || || || ||||| || ||||| | ||||| ||| || || || | ||| || || Sbjct 24049 AATCGAGGCTAAATTACAGACAGCAATTTCATCTTTAGATGAATATTCCACAATCTCCGT 24108 Query 111298 ACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGC 111357 ||| | || |||| || || || || | ||| | ||| || || || || Sbjct 24109 ACAAAGATTAGAACATTTGATTGTACCAAGATTTTGTTGATTTGATTTACGATTACAATG 24168 Query 111358 ATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATT 111401 |||||| || | ||| || || || || || || | ||||||| Sbjct 24169 ATCCTTATAAACCATATACGGTGTGCCAGTTTCGATTTGTGATT 24212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018607217600