Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1179 149 8e-31 seq659 102 1e-16 >seq1179 Length=350002 Score = 149 bits (164), Expect = 8e-31 Identities = 451/686 (66%), Gaps = 18/686 (3%) Strand=Plus/Minus Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 || ||||| ||||| | ||||| || || || ||||| ||||| || ||||| ||||| Sbjct 62889 GTATATGGTTCAAATGATTCATTATTGCCTAAAATTTGTGCTGTAGATGCTGTTGGCATT 62830 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 ||||| | || | || || || | ||| |||| ||| | | || | | | | Sbjct 62829 GGTGCAACAAGTAAACTATTTCGTATACCATTTTGAGCAATTTTTGCTTTCAATTCATTC 62770 Query 118314 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 || || | | | || || || | | | |||||||||| | || || ||||||| | Sbjct 62769 CAATCCCAAAGATCAG-TTGGTGTGCGGTT-CCACATATCATATTGTAGAATACCTTTCG 62712 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCG 118431 | |||| ||||| ||| |||| ||||||||||| || |||||||| | || | Sbjct 62711 ATACTGGTGATCCTTCATATGTTTCATATGGGCCAAATTTTTCAGCCAATTCACAACTTG 62652 Query 118432 CCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGT 118491 | || | || | | ||| ||||||||||| || || ||||||| || || ||| Sbjct 62651 CTTCCAATGCACCATAATAAATTGTTTCAAATATTTGAATATTCATTTGTTTAGCTTCGA 62592 Query 118492 CGGAATCAAACGCGAGTCGGCACAAAATA-AATACATCCGCGAGACCTTGGACACCGAGG 118550 ||| | | || ||| || | ||| |||| || | |||||| ||||| | Sbjct 62591 GACTTTCATATG-GATAACGCATTAAGTTGAATGCATCGGCTAAACCTTGTACACCAATT 62533 Query 118551 CCAATTGGGCGATGTCTCATATTAGAC---TTC-CGAGCGGTCTCCACGGGATAAAAATT 118606 ||||| || ||||| | | ||| || ||| | |||| | ||||||||||| Sbjct 62532 CCAATCGGTCGATGACGTAGATTCGAACGTTTCGCTTCCGGT----AATGGATAAAAATT 62477 Query 118607 CCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTC 118666 |||||||||| | || | |||||| || | || || ||||| | || || || Sbjct 62476 ACTATCGATAATTTTGTTCAAATTTTTTGTCATTACTTTAACAATTTCTTTGAGTTTATC 62417 Query 118667 GTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATT 118726 |||||||| | | || | || |||| | || | | ||||| |||| ||| Sbjct 62416 ATAATCAAATGTAAAAAGCTTTGGATCGACAAAACGTGGCAATGAAATTGAAGCCAAATT 62357 Query 118727 ACACACAGAGGTCTCATC--CTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 ||| || | | ||||| || || | || || | ||||||||| || | |||||| Sbjct 62356 ACAAACGGCAATTTCATCAGCTGAT--GAATATTCAACAATTTCCGTACAAAGATTTGAA 62299 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 | || ||||| ||||| || | ||||||||| || ||||| ||| || || | | Sbjct 62298 CATTTGATGGTTCCCAAATTTTGTTGATTTGATTTACGATTACAATGATCTTTATATACC 62239 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTG 118870 |||||||| || || || || |||| Sbjct 62238 ATGTATGGAGTACCAGTTTCAATTTG 62213 >seq659 Length=572639 Score = 102 bits (112), Expect = 1e-16 Identities = 267/405 (66%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 ||||| || ||||| || | || || || | ||||| ||||| || || || || || Sbjct 248148 CGATCGAAACGACCCGGCCTTAGCAGTGCTTTATCAAGAATATCTATACGATTAGTAGCG 248207 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || | ||||||| | | ||| ||| |||||||| || ||| | |||||| Sbjct 248208 GCCAATACAACGACATTGGAAGCCGTATTAAAACCATCCATTTCGACCAATAATTGATTC 248267 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACG 14242 | || | ||| |||| || || ||| | ||| |||| ||| ||| Sbjct 248268 AATGTATTTTCCTGTTCGCTATGGCCACCTATATTGCGACCACCACGTTTACGACCAACG 248327 Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATA 14302 || ||||||||||| || || | || ||||| ||||| ||| || | | |||| ||| Sbjct 248328 GCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 248387 Query 14303 TCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA-ACA 14361 ||||| || | | ||| ||||| |||||||| || | ||| | | | | || || Sbjct 248388 TCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCCAGATACG 248447 Query 14362 TTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGT 14421 | |||||| || || |||| |||||| || | ||| || | || || || || || Sbjct 248448 GT-GATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTTACCAGT 248506 Query 14422 CCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 |||||| || | ||||||||||| ||| ||| | ||||| Sbjct 248507 ACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACC 248551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618422011869360