Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1179 161 1e-34 seq659 129 7e-25 >seq1179 Length=350002 Score = 161 bits (178), Expect = 1e-34 Identities = 457/694 (66%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 104909 CAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAAT 104968 |||| || |||||||| ||||||||| | || ||||| ||||| | || ||| Sbjct 62213 CAAATTGAAACTGGTACTCCATACATGGTATATAAAGATCATTGTAATCGTAAATCAAAT 62272 Query 104969 CAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACA 105028 ||| | |||||||| ||||| |||| ||||| ||||| ||||| | |||| | || Sbjct 62273 CAACAAAATTTGGGAACCATCAAATGTTCAAATCTTTGTACGGAAATTGTTGAATATTCA 62332 Query 105029 GACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGAT 105088 ||||| | || || ||||| | || ||||| | | || | ||| ||| Sbjct 62333 TCAGCTGATGAAATTGCCGTTTGTAATTTGGCTTCAATTTCATTGCCACGTTTTGTCGAT 62392 Query 105089 CCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 ||| || |||||||||||||| |||||| | ||| || ||| | || ||| Sbjct 62393 CCAAAGCTTTTTACATTTGATTATGATAAACTCAAAGAAATTGTTAAAGTAATGACAAAA 62452 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAA--ATCTA 105206 || | |||| | |||| ||||| |||||||| || | | | || || || | Sbjct 62453 AATTTGAACAAAATTATCGATAGTAATTTTTATCCATTACCGGAAG--CGAAACGTTCGA 62510 Query 105207 ATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTT 105266 || | | || || || ||||| | ||||| || ||| | || |||| ||||| ||| Sbjct 62511 ATCTACGTCATCGACCGATTGGAATTGGTGTACAAGGTTTAGCCGATGCATTCA-ACTTA 62569 Query 105267 GT-CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACC 105325 | || | ||| ||| |||||| || |||| ||| | |||||||| || Sbjct 62570 ATGCGTTATCCATATGAAAGTCTCGAAGCTAAACAAATGAATATTCAAATATTTGAAACA 62629 Query 105326 ATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAA 105385 || ||| | | || | || || |||| || ||||| || ||| ||||||||| Sbjct 62630 ATTTATTATGGTGCATTGGAAGCAAGTTGTGAATTGGCTGAAAAATTTGGCCCATATGAA 62689 Query 105386 ACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAG 105445 || | ||| || || |||| || |||| | || |||| |||||||| |||| | Sbjct 62690 ACATATGAAGGATCACCAGTATCGAAAGGTATTCTACAATATGATATGT-GGAACCGCAC 62748 Query 105446 ACCAAGCT--TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTC 105503 ||||| || || | || ||| | | | || | | || | || ||| | | Sbjct 62749 ACCAA-CTGATCTTTGGGATTGGAATGAATTGAAAGCAAAAATTGCTCAAAATGGTATAC 62807 Query 105504 GTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATA 105563 | || ||| | || | || |||||||||||||| || || |||||||| || || |||| Sbjct 62808 GAAATAGTTTACTTGTTGCACCAATGCCAACAGCATCTACAGCACAAATTTTAGGCAATA 62867 Query 105564 ATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||||| |||||||| || || | ||||| || Sbjct 62868 ATGAATCATTTGAACCATATACATCAAACATTTA 62901 >seq659 Length=572639 Score = 129 bits (142), Expect = 7e-25 Identities = 273/405 (67%), Gaps = 2/405 (0%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 ||||| || ||||| || | || || || | |||||| ||||| | ||||| || ||| Sbjct 248148 CGATCGAAACGACCCGGCCTTAGCAGTGCTTTATCAAGAATATCTATACGATTAGTAGCG 248207 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || | ||||| | | | | ||| |||||||||||| || ||| | ||| || Sbjct 248208 GCCAATACAACGACATTGGAAGCCGTATTAAAACCATCCATTTCGACCAATAATTGATTC 248267 Query 9644 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9703 | || | |||| |||| || | ||| | | ||| |||| || ||| Sbjct 248268 AATGTATTTTCCTGTTCGCTATGGCCACCTATATTGCGACCACCACGTTTACGACCAACG 248327 Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 |||||||| |||||||| || | |||||||| ||||| || || | | |||| | | Sbjct 248328 GCATCAATTTCATCAATAAATAAAATGCATGGAGCATTTTTACGTGCCATTGCAAACATA 248387 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-ACA 9822 || || ||||| | || ||||| |||||||| || | ||| | || | | || || Sbjct 248388 TCTCGAACACGTGAAGGACCAACACCGACAAACATTTCGAGAAACTCTGAGCCAGATACG 248447 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | |||||| || || |||| |||||| || | ||| || | ||||| ||||| || Sbjct 248448 GT-GATGAAAGGCACTTTAGCTTCACCAGCTGTAGCTTTAGCTAATAGAGTTTTACCAGT 248506 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 |||||| || | || ||||||||| ||||||||| || || Sbjct 248507 ACCTGGTGGTCCAGTTAGAAGGGCACCTTTTGGAATCTTAGCACC 248551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583248361963440