Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq1658 131 1e-25 seq1705 125 4e-24 seq1489 125 4e-24 >seq1658 Length=21299 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | ||||||||| || ||||| || |||||||| Sbjct 17860 CCACCACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTC 17801 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||||||||||||||| || ||||| ||||| || || || Sbjct 17800 AATGTTCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGA 17741 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || ||||| ||| ||| | ||| ||| | ||| || ||| ||| || Sbjct 17740 ATTCCTTCTTTGTCCTGGAT-TTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGAC 17682 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| || || ||||| ||||| || ||||| |||||||| |||||| Sbjct 17681 TTCCAAAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCATG 17633 Score = 120 bits (132), Expect = 2e-22 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || | |||||||||| |||||||| |||||||| || || | ||| || Sbjct 17623 AGACGTAAGACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGATAATGTACGG 17564 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||||||||| ||||| || || || || || || || || | ||||| Sbjct 17563 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGAATACCCTCT 17504 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 || ||| ||| ||||| ||| || | ||| ||||| || | || ||||||| Sbjct 17503 TTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTC--CGATGGTTCGACTTCCAGT 17447 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTG 34703 || || || ||||| ||||| ||||| ||||| || || Sbjct 17446 GTAATAGTCTTACCAGTTAAGGTTTTGACAAAGATTTG 17409 Score = 105 bits (116), Expect = 4e-18 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || || || | ||| || ||| || ||||||||||| ||||| || Sbjct 17403 CCACCACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGAC 17344 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | || || | ||| || |||||||| || || || || || || || || Sbjct 17343 AAAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGG 17284 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCC 34656 | || || |||||| ||| ||| | ||| || | ||| ||||| || | ||| Sbjct 17283 ATACCTTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCAATAGTGTC--CGATGGTTCC 17227 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||||| || || |||||||| ||||| ||||| |||||||| ||||| Sbjct 17226 ACTTCCAATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||||||||| | |||||||||| || ||||| ||||| ||||| Sbjct 18089 CCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 18030 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||||||||||| || || ||||| || || || || Sbjct 18029 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 17970 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTG-TTTTAAC-GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || || ||| ||| ||| | |||| || | ||||| ||| ||| | Sbjct 17969 ATTCCTTCTTTATCT-TGAATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAA 17911 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || |||||||| || || || || || || || ||||| Sbjct 17910 CTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || | |||||| ||| || || |||||||| ||||| || Sbjct 18317 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 18258 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || || || || Sbjct 18257 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 18198 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | || || |||||| ||| ||| | ||| || | | || || | || | |||| Sbjct 18197 ATACCTTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATG-GTATCCGATGGTTCCA 18140 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || |||||||| || || ||||| || || || ||||| Sbjct 18139 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 >seq1705 Length=717327 Score = 125 bits (138), Expect = 4e-24 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||||||| || ||||| ||||||||||| || | ||| || Sbjct 502190 AGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGG 502131 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||||||||| ||||| || || || || || || || || | || || Sbjct 502130 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCT 502071 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 || ||| ||| ||||| ||| || | ||| ||||| || | || ||||||| Sbjct 502070 TTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTC--CGATGGTTCGACTTCCAAT 502014 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 502013 GTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| ||||| | |||||||||| || ||||| ||||| ||||| Sbjct 502655 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 502596 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||||||||||| || || ||||| || || || || Sbjct 502595 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 502536 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| ||| | ||| || | ||||| ||| ||| || Sbjct 502535 ATTCCTTCTTTATCT-TGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAAC 502477 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || |||||||| || || || || || ||||| ||||| Sbjct 502476 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || | |||||| ||| || || |||||||| ||||| || Sbjct 502883 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 502824 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || || || || Sbjct 502823 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 502764 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | || || |||||| ||| ||| | ||| || | | || || | || | |||| Sbjct 502763 ATACCTTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATG-GTATCCGATGGTTCCA 502706 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || |||||||| || || ||||| || || || ||||| Sbjct 502705 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || | |||||| ||| || ||||| || |||||||| | |||||| Sbjct 502418 AGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGG 502359 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||||||||||| || || || || || || || || | || || Sbjct 502358 CCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCT 502299 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| || | ||| || || ||| ||||||| || Sbjct 502298 TTGTC-CTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGT 502240 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || ||||| |||||||| ||||| Sbjct 502239 AATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 >seq1489 Length=23360 Score = 125 bits (138), Expect = 4e-24 Identities = 163/221 (74%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| || | ||||||||| || ||||| ||||||||||| || | ||| || Sbjct 5799 AGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGG 5858 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||||||||||||||| ||||| || || || || || || || || | || || Sbjct 5859 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCT 5918 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 || ||| ||| ||||| ||| || | ||| ||||| || | || ||||||| Sbjct 5919 TTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTC--CGATGGTTCGACTTCCAAT 5975 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 5976 GTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| ||||| | |||||||||| || ||||| ||||| ||||| Sbjct 5334 CCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTC 5393 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | |||||||||||||| || || ||||| || || || || Sbjct 5394 AAGGTTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGG 5453 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| ||| | ||| || | ||||| ||| ||| || Sbjct 5454 ATTCCTTCTTTATCT-TGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAAC 5512 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || |||||||| || || || || || ||||| ||||| Sbjct 5513 TTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| || | |||||| ||| || || |||||||| ||||| || Sbjct 5106 CCACCACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGAC 5165 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || || || || Sbjct 5166 AAAGTACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGG 5225 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | || || |||||| ||| ||| | ||| || | | || || | || | |||| Sbjct 5226 ATACCTTCTTTGTCT-TGAATTTTAGCTTTTACATTTTCAATG-GTATCCGATGGTTCCA 5283 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || |||||||| || || ||||| || || || ||||| Sbjct 5284 CTTCCAAGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 91.5 bits (100), Expect = 9e-14 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || || | |||||| ||| || ||||| || |||||||| | |||||| Sbjct 5571 AGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGG 5630 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||||||||||| || || || || || || || || | || || Sbjct 5631 CCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCT 5690 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| || | ||| || || ||| ||||||| || Sbjct 5691 TTGTC-CTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGT 5749 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || ||||| || ||||| |||||||| ||||| Sbjct 5750 AATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314723056181498