Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1705 149 5e-31 seq1658 149 5e-31 seq1489 149 5e-31 >seq1705 Length=717327 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||||||| |||| || || | || || | ||||||||||| || Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 502716 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||||||||| || ||||| ||||| Sbjct 502717 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 502776 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||||||||| | || | |||||||||||| Sbjct 502777 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 502836 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || ||| | ||| | || |||| | || ||||| Sbjct 502837 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGG 502883 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || | ||||| | ||||||||||| || Sbjct 501745 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCT 501804 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| ||||| |||||||| || ||||| || || Sbjct 501805 GACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAG 501864 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | || || || |||||||| || | |||| | || ||||||||||| Sbjct 501865 CAACGATTGATCTTTGCTGGAAAGCAATTGGAGGA-TGGTCGAACTTTGTCCGATTACAA 501923 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || ||| | ||| | || || || | || ||||| || Sbjct 501924 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGGTAT 501974 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||||||||| | ||||| | ||||| || || ||| Sbjct 502201 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 502260 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||| ||||||||||| || ||||| ||||| Sbjct 502261 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 502320 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | ||||| ||||| |||||||| | ||| | || ||||| || Sbjct 502321 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGA-TGGCCGAACATTGAGTGATTATAA 502379 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || ||| | ||| | || || ||| | || ||||| || Sbjct 502380 TATCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGGTAT 502430 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| || || | ||||| | ||||| || || || Sbjct 502429 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 502488 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 502489 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 502548 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| ||||| |||||||| | ||| | ||||||||| Sbjct 502549 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 502608 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||| | || || ||| | || ||||| || Sbjct 502609 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTACGTCTTCGTGGTGGTAT 502658 Score = 102 bits (112), Expect = 7e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| || ||||| || | || ||||||||||| ||||| | || Sbjct 501618 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGA-TGGTC 501676 Query 27149 GACCGTT-TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || | || |||||||| || ||||||||||| || || || |||||||| |||||| | | Sbjct 501677 GAACTTTGTCCGATTATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTAC 501736 Query 27208 GGGGTGGCAT 27217 | ||||| || Sbjct 501737 GTGGTGGAAT 501746 >seq1658 Length=21299 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||||||| |||| || || | || || | ||||||||||| || Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 18150 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||||||||| || ||||| ||||| Sbjct 18151 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 18210 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||||||||| | || | |||||||||||| Sbjct 18211 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 18270 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || ||| | ||| | || |||| | || ||||| Sbjct 18271 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGG 18317 Score = 145 bits (160), Expect = 7e-30 Identities = 176/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| | || || || | ||||| | ||||||||||| || Sbjct 17177 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATCG 17236 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| |||||||||||||| || ||||| ||||| Sbjct 17237 GACACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAG 17296 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | ||||| || |||||||| || | |||| | || || |||||||| Sbjct 17297 CAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGA-TGGTCGAACTTTGTCTGATTACAA 17355 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAA 27223 ||||||||| || || ||| | ||| | || || || | || ||||| || |||| Sbjct 17356 CATTCAAAAAGAATCCACCCTTCATCTTGTATTACGGCTTCGTGGTGGTATGCCAAA 17412 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| ||||| |||||||||| | |||||| | ||||| || || || Sbjct 17633 CATGCAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATC 17692 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| ||||| || ||||||||||| || ||||| ||||| Sbjct 17693 AGATACCATTGAAAACGTGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATCA 17752 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| ||||| || | ||||| |||||||||||||| | || | ||||| || Sbjct 17753 ACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAA 17812 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||| | || |||||| | || ||||| || Sbjct 17813 TATCCAAAAAGAATCTACTCTCCATCTTGTGTTGCGTCTTCGTGGTGGTAT 17863 Score = 116 bits (128), Expect = 3e-21 Identities = 165/231 (71%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || ||| |||| || || | ||||| | ||||| || || || Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 17921 Query 27048 GACTCGATTGAGATGGTCAAACAA-AAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | || || | || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 17922 GATACAATCGAAAATGTGAAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCA 17981 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| || || | ||||| ||||| |||||||| | ||| | |||||||| Sbjct 17982 GCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAA 18041 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||| || || || | ||| | || |||||| | || ||||| || Sbjct 18042 CATCCAAAAAGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGTGGTAT 18092 Score = 102 bits (112), Expect = 7e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| || ||||| || | || ||||||||||| ||||| | || Sbjct 17050 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGA-TGGTC 17108 Query 27149 GACCGTT-TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || | || ||||||||||| |||||||| || || || || |||||||| |||||| | | Sbjct 17109 GAACTTTGTCCGATTACAATATTCAAAAAGAATCTACATTGCATTTGGTATTGCGTCTAC 17168 Query 27208 GGGGTGGCAT 27217 | ||||| || Sbjct 17169 GTGGTGGAAT 17178 >seq1489 Length=23360 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| ||||||||| |||| || || | || || | ||||||||||| || Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCG 5273 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||||||||||||||| || ||||| ||||| Sbjct 5272 GATACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAG 5213 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||||||||| | || | |||||||||||| Sbjct 5212 CAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAAC 5153 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || || ||| | ||| | || |||| | || ||||| Sbjct 5152 ATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGG 5106 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| || || | ||||| | ||||||||||| || Sbjct 6244 ATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCT 6185 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| ||||| ||||| |||||||| || ||||| || || Sbjct 6184 GACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAG 6125 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | || || || |||||||| || || ||| | || ||||||||||| Sbjct 6124 CAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGT-CGAACTTTGTCCGATTACAA 6066 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| |||||||| || ||| | ||| | || || || | || ||||| || Sbjct 6065 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGGTAT 6015 Score = 131 bits (144), Expect = 1e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| ||||||||||| | ||||| | ||||| || || ||| Sbjct 5788 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 5729 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || ||| |||||||| ||||||||||| || ||||| ||||| Sbjct 5728 GATACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAG 5669 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | ||||| ||||| |||||||| | ||| | || ||||| || Sbjct 5668 CAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGA-TGGCCGAACATTGAGTGATTATAA 5610 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || ||| | ||| | || || ||| | || ||||| || Sbjct 5609 TATCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGGTAT 5559 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| |||| || || | ||||| | ||||| || || || Sbjct 5560 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 5501 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| |||||||| || ||||| ||||| Sbjct 5500 GATACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAG 5441 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||||| ||||| |||||||| | ||| | ||||||||| Sbjct 5440 CAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACAAC 5381 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||| | || || ||| | || ||||| || Sbjct 5380 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTACGTCTTCGTGGTGGTAT 5331 Score = 102 bits (112), Expect = 7e-17 Identities = 102/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| ||||| || ||||| || | || ||||||||||| ||||| || | Sbjct 6371 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGT-C 6313 Query 27149 GACCGTT-TCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGC 27207 || | || |||||||| || ||||||||||| || || || |||||||| |||||| | | Sbjct 6312 GAACTTTGTCCGATTATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTAC 6253 Query 27208 GGGGTGGCAT 27217 | ||||| || Sbjct 6252 GTGGTGGAAT 6243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909125365120