Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq206 116 3e-21 >seq206 Length=237414 Score = 116 bits (128), Expect = 3e-21 Identities = 263/391 (67%), Gaps = 17/391 (4%) Strand=Plus/Plus Query 118824 ATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGATCTCCCTGG-G 118882 |||||| || |||||| |||||||||||||||||| || || || ||||| || | | Sbjct 141975 ATATTCGGCACCAAAATGTCTCCATTGAAAACCATATACTGGACCTAGATCACCTTCTTG 142034 Query 118883 ACCTAAAATCT--AAACCTACTTTTCTCT-GAAATTCTTTTGACCCATTAGCATTCCAAA 118939 || ||| ||||| | | || |||||||| ||| ||||| |||| ||| | Sbjct 142035 ACG----ATCGGCAAACCCAAGGCTATCGAGAAATTCTCGTGATCCATTTGCATCCCAGA 142090 Query 118940 TAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTAAAAACCAAAGAA 118999 | || ||||||| | ||| | || |||| || || || || |||||| |||| Sbjct 142091 TTTTTACACCTTTTTCAGACAGCTTTTTCGAGTCAGTTGATCCTTGTAGAAACCATAGAA 142150 Query 119000 GCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTGGAAAC---TGAC 119056 |||| || ||||| || | |||||| || |||||| || | || ||| || ||| Sbjct 142151 GCTCTTCGACAACACCACGCCAAAATACACGTTTTGTAGTGATCAATGGTAATGTTTGAT 142210 Query 119057 CTCTAAGTGAATATCTTGTTTGTGTTCCAAAAATAGACAGAGTCCCAACACCTGTTCTAT 119116 | | ||||||||| | ||||||| ||||| | || | || ||| ||||| | | Sbjct 142211 CACGAAGTGAATAACGACTTTGTGTACCAAACACCGAAAATGTACCAGTTCCTGTACGGT 142270 Query 119117 CATCTCTCTTGATACCCTGCTCTAAAATAGTTCTAATTAGATCAAGGTATTTTTTCTCAT 119176 ||| | | | | ||| | || | | | | | ||||||||||| |||| | || | Sbjct 142271 CATTTTTTTCGGCACCATTATCAAGGACATGTTTGATTAGATCAAGATATTGATATTCGT 142330 Query 119177 CGTGATTTATAGCCATGTTTTATCttttttt 119207 |||| || ||| ||||||| ||||| Sbjct 142331 CGTGTTT------CATTTTTTATCGATTTTT 142355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414468182250184