Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1658 120 2e-22 seq1705 114 9e-21 seq1489 114 9e-21 >seq1658 Length=21299 Score = 120 bits (132), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| ||||| | ||||| ||| |||||| | || || ||| || Sbjct 17176 AATGCAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAAC-CAT 17234 Query 27849 CG---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || || || | ||| |||||| ||||| |||||||||||| | || || Sbjct 17235 CGGACACTATTGAAAAT--GTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGA 17292 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 ||||||||||| || ||||||||||| |||||||| || | || | ||||| ||||| Sbjct 17293 TCAGCAACGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTA 17352 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| |||||||| ||| | ||| | || || || | ||||| || Sbjct 17353 CAACATTCAAAAAGAATCCACCCTTCATCTTGTATTACGGCTTCGTGGTGG 17403 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| ||| || || | || || ||| || | Sbjct 18091 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAAC-CATC 18149 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| |||||||||||| | || || Sbjct 18150 GGATACCATTGAAAAT--GTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGAT 18207 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||||||||| ||||||||||| ||||||||||| || | || | |||||||||||| Sbjct 18208 CAGCAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTAC 18267 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| ||| | ||| | || |||| | ||||| || Sbjct 18268 AACATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGG 18317 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 27793 CAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACCG-- 27850 ||||| ||||| ||||| | ||||| || ||||||| | || |||||| || || Sbjct 17409 CAAATCTTTGTCAAAACCTTAACTGGTAAGACTATTACACTGGAAGTCGAAC-CATCGGA 17467 Query 27851 -ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||||| | ||| || ||| |||||| || ||||| ||| |||| || ||| Sbjct 17468 CACGATTGAAAAT--GTGAAAGCAAAAATCCAAGATAAAGAGGGTATTCCACCAGATCAG 17525 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || |||||||| || |||||| | || || | || | || || || || ||| Sbjct 17526 CAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGACTATAAC 17585 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || |||| | ||| | || || ||| | ||||| ||| Sbjct 17586 ATCCAAAAGGAATCCACTCTCCATCTTGTCTTACGTCTACGTGGTGGC 17633 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| || |||||||| || || ||||| |||||||||||||| || | || Sbjct 16750 AGGTATTCCACCAGATCAGCAACGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCG 16809 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | ||||||||||| ||||| |||||||| || ||||||||||| | ||| | || Sbjct 16810 TACATTGTCCGATTATAACATTCAAAAAGAATCGACATTGCATTTGGTACTTCGTCTTCG 16869 Query 28011 TGGCGG 28016 ||| || Sbjct 16870 TGGAGG 16875 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| || |||||||| || || ||||| || |||||||| || || | || Sbjct 17050 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCG 17109 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | |||||||||||||| || |||||||| || ||||||||||| |||||| | || Sbjct 17110 AACTTTGTCCGATTACAATATTCAAAAAGAATCTACATTGCATTTGGTATTGCGTCTACG 17169 Query 28011 TGGCGG 28016 ||| || Sbjct 17170 TGGTGG 17175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||| || || || ||| | ||||| ||| |||||| | || || || | || Sbjct 17862 ATGCAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 17921 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| | || | |||| | || |||||||| | || || | Sbjct 17922 GATACAATCGAAAATGTGAAAAGCCAAAATTCAA-GATAAAGAAGGAATCCCACCAGATC 17980 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||||||||| ||||| ||||| || | || | |||| ||||||| Sbjct 17981 AGCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACA 18040 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| |||| | ||| | || |||||| | ||||| || Sbjct 18041 ACATCCAAAAAGAATCCACTCTCCATCTTGTGTTGCGTCTTCGTGGTGG 18089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| ||||| | || || ||| ||||| | || ||||| | || Sbjct 17634 ATGCAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATCA 17693 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | || || ||| ||||| ||||||||||| |||| || | Sbjct 17694 GATACCATTGAAAAC--GTGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATC 17751 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || ||||||||||| ||||||||||| || | | | ||| ||||| | Sbjct 17752 AACAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATA 17811 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| | ||| | || |||||| | ||||| || Sbjct 17812 ATATCCAAAAAGAATCTACTCTCCATCTTGTGTTGCGTCTTCGTGGTGG 17860 >seq1705 Length=717327 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| || ||||||| | || |||||| || | Sbjct 501973 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAAC-CATC 502031 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| || ||| |||||| || ||||||||| | || || Sbjct 502032 GGACACGATTGAAAAT--GTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGAT 502089 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || |||||||| || |||||| | || || | || | || || ||||| Sbjct 502090 CAGCAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTAT 502149 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| | ||| | || |||||| | ||||| || Sbjct 502150 AACATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 502199 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| | ||||| ||| |||||| | || || ||| | Sbjct 501744 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 501803 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || |||||| ||||| || ||||||||| | || || || Sbjct 501804 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 501863 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| ||||| |||||||| || | || | |||||||||||||| Sbjct 501864 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 501923 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| | ||| | || || || | ||||| || Sbjct 501924 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGG 501971 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| ||| || || | || || ||| || | Sbjct 502657 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAAC-CATC 502715 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| |||||||||||| | || || Sbjct 502716 GGATACCATTGAAAAT--GTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGAT 502773 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||||||||| ||||||||||| ||||||||||| || | || | |||||||||||| Sbjct 502774 CAGCAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTAC 502833 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| ||| | ||| | || |||| | ||||| || Sbjct 502834 AACATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGG 502883 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| || || ||| | ||||| ||| |||||| | || || || | || Sbjct 502429 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 502488 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| || |||||||| | || || | Sbjct 502489 GATACAATCGAAAAT--GTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATC 502546 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||||||||| ||||| ||||| || | || | |||| ||||||| Sbjct 502547 AGCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACA 502606 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| |||| | ||| | || || ||| | ||||| || Sbjct 502607 ACATCCAAAAAGAATCCACTCTCCATCTTGTGTTACGTCTTCGTGGTGG 502655 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || || |||||| | || ||||| || Sbjct 502201 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 502260 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| |||||||||||| | || || | Sbjct 502261 GATACCATTGAAAAT--GTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATC 502318 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||||| || |||||||| ||||| ||||| || | || | ||| ||||| | Sbjct 502319 AGCAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATA 502378 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| | ||| | || || ||| | ||||| || Sbjct 502379 ATATCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGG 502427 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| || |||||| | || || ||||| |||||||||||||| || | || Sbjct 501318 AGGTATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCG 501377 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | ||||||||||| ||||| |||||||| || ||||||||||| | ||| | || Sbjct 501378 TACATTGTCCGATTATAACATTCAAAAAGAATCGACATTGCATTTGGTACTTCGTCTTCG 501437 Query 28011 TGGCGG 28016 ||| || Sbjct 501438 TGGTGG 501443 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| || |||||||| || || ||||| || |||||||| || || | || Sbjct 501618 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCG 501677 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | ||||||||||| || || ||||| || || ||||||||||| |||||| | || Sbjct 501678 AACTTTGTCCGATTATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTACG 501737 Query 28011 TGGCGG 28016 ||| || Sbjct 501738 TGGTGG 501743 >seq1489 Length=23360 Score = 114 bits (126), Expect = 9e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | ||||| || ||||||| | || |||||| || | Sbjct 6016 ATGCAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAAC-CATC 5958 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | ||| || ||| |||||| || ||||||||| | || || Sbjct 5957 GGACACGATTGAAAAT--GTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGAT 5900 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || |||||||| || |||||| | || || | || | || || ||||| Sbjct 5899 CAGCAACGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTAT 5840 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||||||| ||| | ||| | || |||||| | ||||| || Sbjct 5839 AACATCCAAAAAGAATCTACTCTCCATCTTGTCTTGCGTCTACGTGGTGG 5790 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| |||||||| | ||||| ||| |||||| | || || ||| | Sbjct 6245 AATGCAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATC 6186 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || |||||| ||||| || ||||||||| | || || || Sbjct 6185 TGACACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCA 6126 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 |||||| || || ||||| ||||| |||||||| || | || | |||||||||||||| Sbjct 6125 GCAACGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAA 6066 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||| || ||| | ||| | || || || | ||||| || Sbjct 6065 CATCCAAAAGGAATCCACCCTTCATCTCGTATTACGACTTCGTGGTGG 6018 Score = 105 bits (116), Expect = 5e-18 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || |||||| | ||||| ||| || || | || || ||| || | Sbjct 5332 ATGCAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAAC-CATC 5274 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| |||||||||||| | || || Sbjct 5273 GGATACCATTGAAAAT--GTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGAT 5216 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||||||||| ||||||||||| ||||||||||| || | || | |||||||||||| Sbjct 5215 CAGCAACGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTAC 5156 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| ||| | ||| | || |||| | ||||| || Sbjct 5155 AACATTCAGAAAGAATCCACCCTCCATCTTGTACTGCGACTTCGTGGTGG 5106 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| || || ||| | ||||| ||| |||||| | || || || | || Sbjct 5560 ATGCAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCA 5501 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| ||||| || |||||||| | || || | Sbjct 5500 GATACAATCGAAAAT--GTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATC 5443 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || ||||||||||| ||||| ||||| || | || | |||| ||||||| Sbjct 5442 AGCAGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAACCTTGAGTGATTACA 5383 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||||| |||| | ||| | || || ||| | ||||| || Sbjct 5382 ACATCCAAAAAGAATCCACTCTCCATCTTGTGTTACGTCTTCGTGGTGG 5334 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| ||||| | || || || |||||| | || ||||| || Sbjct 5788 ATGCAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCC 5729 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| ||||| |||||||||||| | || || | Sbjct 5728 GATACCATTGAAAAT--GTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATC 5671 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||||| || |||||||| ||||| ||||| || | || | ||| ||||| | Sbjct 5670 AGCAACGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATA 5611 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| | ||| | || || ||| | ||||| || Sbjct 5610 ATATCCAAAAAGAATCCACCCTCCATCTTGTCTTACGTCTACGTGGTGG 5562 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| || |||||| | || || ||||| |||||||||||||| || | || Sbjct 6671 AGGTATTCCACCAGATCAGCAAAGATTGATCTTTGCTGGAAAACAATTGGAAGATGGCCG 6612 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | ||||||||||| ||||| |||||||| || ||||||||||| | ||| | || Sbjct 6611 TACATTGTCCGATTATAACATTCAAAAAGAATCGACATTGCATTTGGTACTTCGTCTTCG 6552 Query 28011 TGGCGG 28016 ||| || Sbjct 6551 TGGTGG 6546 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| || |||||||| || || ||||| || |||||||| || || | || Sbjct 6371 AGGTATTCCACCAGATCAGCAACGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGTCG 6312 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | ||||||||||| || || ||||| || || ||||||||||| |||||| | || Sbjct 6311 AACTTTGTCCGATTATAATATTCAAAAGGAATCTACATTGCATTTGGTATTGCGTCTACG 6252 Query 28011 TGGCGG 28016 ||| || Sbjct 6251 TGGTGG 6246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355855000953462