Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1658 129 1e-24 seq1705 116 9e-21 seq1489 116 9e-21 >seq1658 Length=21299 Score = 129 bits (142), Expect = 1e-24 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | | ||||| || ||||| || ||||||||||| |||||||| | ||| | Sbjct 17855 ACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGT 17796 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 || | |||||||||| || || || || || || | |||||||| || || |||| || Sbjct 17795 TC-TGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTC 17737 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| ||||||||||| || |||||||||||| ||||| || || || || || | Sbjct 17736 CTTCTTTGTCCTGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCA 17677 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || || || || | || || ||||| | ||||| Sbjct 17676 AAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || |||||| || |||||||| || |||||||||||||| || | | || Sbjct 17627 ACGTAGACGTAAGACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGATAATGT 17568 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || || || || || || || | ||||| || || || |||| || Sbjct 17567 ACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGAATACC 17508 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || || || ||||| ||| |||||| ||||| || ||||| || ||| || || || Sbjct 17507 CTCTTTATCTTGGATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAG 17448 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || || ||||| || || | || || ||||| Sbjct 17447 TGTAATAGTCTTACCAGTTAAGGTTTTGACAAA 17415 Score = 109 bits (120), Expect = 1e-18 Identities = 162/225 (72%), Gaps = 5/225 (2%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | | ||||| || |||||||| |||||||||||||| ||||| | ||| || Sbjct 18084 ACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAA-GG 18026 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| ||| || || || || || | || || || || || || | || Sbjct 18025 TTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTC 17966 Query 211012 CTTCCTTGTCCTGGATCTTTTG--TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 |||| || || || || ||| | |||||| |||||||| || || || ||||| || Sbjct 17965 CTTCTTTATCTTGAAT-TTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTC 17907 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || || || || || || | |||||| || || | ||||| Sbjct 17906 CAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 >seq1705 Length=717327 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 ||| || | || |||||| || || ||||| ||||||||||| |||||||| | ||| | Sbjct 502422 ACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAA-TG 502364 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| ||| || || || ||||| | ||||| || || || || | | Sbjct 502363 TTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATAC 502304 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| |||||||| || || |||||| ||||| ||||| || || || || || | Sbjct 502303 CTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCA 502244 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | || || ||||| | ||||| Sbjct 502243 ATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || ||||| || |||||||| |||||||||||||| ||||| | ||| || Sbjct 502650 ACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAA-GG 502592 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| ||| || || || || || | || || || || || || | || Sbjct 502591 TTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTC 502532 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| || || || || || |||||| |||||||| || || || ||||| || | Sbjct 502531 CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCA 502472 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | |||||| || || | ||||| Sbjct 502471 ATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || ||||| || |||||||||||||||||||| | | || | |||||||| Sbjct 502182 GACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTC 502123 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || || || || | ||||| || || || || | ||||| || || || Sbjct 502122 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTG 502063 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| ||| |||||| ||||| || ||||| || ||| || || | || || ||||| Sbjct 502062 GATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTT 502003 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | || || ||||| | ||||| Sbjct 502002 ACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || || ||||| ||||| || ||||||||||| ||||| | | || Sbjct 501966 ACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGT 501907 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||| || || ||||| | ||||| ||||| || || | || Sbjct 501906 TCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACC 501847 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || ||||| || ||| || ||||| || |||||||| ||| || || | Sbjct 501846 TTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAA 501787 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || | || || || || | |||||| Sbjct 501786 TGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 >seq1489 Length=23360 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||| | || ||||| || |||||||| |||||||||||||| ||||| | ||| || Sbjct 5339 ACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAA-GG 5397 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| ||| || || || || || | || || || || || || | || Sbjct 5398 TTCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTC 5457 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| || || || || || |||||| |||||||| || || || ||||| || | Sbjct 5458 CTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCA 5517 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || | |||||| || || | ||||| Sbjct 5518 ATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 116 bits (128), Expect = 9e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 ||| || | || |||||| || || ||||| ||||||||||| |||||||| | ||| | Sbjct 5567 ACGTAGACGTAAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAA-TG 5625 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | |||||||||| ||| || || || ||||| | ||||| || || || || | | Sbjct 5626 TTCGGCCATCTTCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATAC 5685 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||| |||||||| || || |||||| ||||| ||||| || || || || || | Sbjct 5686 CTTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCA 5745 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| || || | || || ||||| | ||||| Sbjct 5746 ATGTAATGGTCTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210905 GACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTC 210964 |||||| || ||||| || |||||||||||||||||||| | | || | |||||||| Sbjct 5807 GACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTC 5866 Query 210965 CAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTG 211024 || || || || || || || | ||||| || || || || | ||||| || || || Sbjct 5867 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTG 5926 Query 211025 GATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTT 211084 ||| ||| |||||| ||||| || ||||| || ||| || || | || || ||||| Sbjct 5927 GATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTT 5986 Query 211085 TCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | || || ||||| | ||||| Sbjct 5987 ACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| || || || ||||| ||||| || ||||||||||| ||||| | | || Sbjct 6023 ACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGT 6082 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||| ||||| || || ||||| | ||||| ||||| || || | || Sbjct 6083 TCGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACC 6142 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || || ||||| || ||| || ||||| || |||||||| ||| || || | Sbjct 6143 TTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAA 6202 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || | || || || || | |||||| Sbjct 6203 TGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159126663110690