Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1705 165 2e-35 seq1658 165 2e-35 seq1489 165 2e-35 seq818 107 5e-18 >seq1705 Length=717327 Score = 165 bits (182), Expect = 2e-35 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||| ||||| ||||| ||||||||||| || | |||||||||| |||||| Sbjct 502878 ACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGT 502819 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || || || | ||||| || || || || ||||| Sbjct 502818 ACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACC 502759 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| |||| ||| ||| ||||| || || | |||||| || | Sbjct 502758 TTCTTTGTCTTGAAT-TTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCA 502700 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || || ||||||||||||| ||| | |||||| Sbjct 502699 AGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||| |||||||| ||||||||||||| || ||||| | || || Sbjct 502194 ACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGT 502135 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || ||||| || || | |||||| || || || || ||||| Sbjct 502134 ACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACC 502075 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || |||||||| |||||| |||||| ||| || ||||| || | ||| || || | Sbjct 502074 TTCTTTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCA 502016 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || ||||| || || || ||||| | || | |||||| Sbjct 502015 ATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 |||||| ||||| |||||||||||||||| ||| ||||| ||| |||| |||||||| Sbjct 502410 GACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTC 502351 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 | ||| || || || ||||| | ||||| || || || || |||||||| ||||| || Sbjct 502350 CAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTG 502291 Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 || ||| || |||||| ||| ||||| || || | || || || || || || |||| Sbjct 502290 AAT-TTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCT 502232 Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||| ||||| | || | |||||| Sbjct 502231 TGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||||| |||||||||||||||||||||| |||||||| ||| || Sbjct 502650 ACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGT 502591 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||| || || || || || | ||| || || || || || || || Sbjct 502590 TCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCC 502531 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| || |||||| |||||| || ||||| | || || || | Sbjct 502530 TTCTTTATCTTGAAT-TTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCA 502472 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || |||||||| || | ||| | |||||| Sbjct 502471 ATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 >seq1658 Length=21299 Score = 165 bits (182), Expect = 2e-35 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||| ||||| ||||| ||||||||||| || | |||||||||| |||||| Sbjct 18312 ACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGT 18253 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || || || | ||||| || || || || ||||| Sbjct 18252 ACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACC 18193 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| |||| ||| ||| ||||| || || | |||||| || | Sbjct 18192 TTCTTTGTCTTGAAT-TTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCA 18134 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || || ||||||||||||| ||| | |||||| Sbjct 18133 AGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| |||||||| ||||||||||||| ||| ||||| ||| || Sbjct 17855 ACGAAGACGCAACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGT 17796 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 ||| |||||||| | || || || || || || | |||||||| || || ||||| || Sbjct 17795 TCTGCCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCC 17736 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||| ||||| ||| || ||||| ||| ||||| ||||| | || || || | Sbjct 17735 TTCTTTGTCCTGGAT-TTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCA 17677 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || ||||| ||||| ||||| | || | |||||| Sbjct 17676 AAGTAATGGTTTTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 141 bits (156), Expect = 2e-28 Identities = 167/224 (75%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || ||||| |||||||||||||||||||||| |||||||| ||| || Sbjct 18084 ACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGT 18025 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||| || || || || || | ||| || || || || || || || Sbjct 18024 TCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCC 17965 Query 225612 TTCCTTGTCTTGGATCTTTTGC--TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCT 225669 ||| || ||||| || ||| || |||||| |||||| || ||||| | || || || Sbjct 17964 TTCTTTATCTTGAAT-TTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCC 17906 Query 225670 AACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || |||||||| || | ||| | |||||| Sbjct 17905 AATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 140 bits (154), Expect = 8e-28 Identities = 167/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||||| || || |||||||||||||| | |||||||| | |||||| Sbjct 17398 ACGAAGCCGTAATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGT 17339 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || | ||||| || || ||||| | ||||| || || || || ||||| Sbjct 17338 TCGACCATCCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACC 17279 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| ||||||||||| ||| || || ||| ||| || ||||| || | |||||| || | Sbjct 17278 TTCTTTGTCTTGGAT-TTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCA 17220 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 | || || || || || || || ||||| | || | ||||||| Sbjct 17219 ATGTAATGGTTTTACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 131 bits (144), Expect = 4e-25 Identities = 148/196 (76%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 |||||| |||||||||||||| ||||||| || || || | || || | |||||||| Sbjct 17615 GACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGATAATGTACGGCCATCTTC 17556 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 || || || ||||| || || | |||||| || || || |||||||| || || ||||| Sbjct 17555 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGAATACCCTCTTTATCTTG 17496 Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 ||| |||||| |||||| ||| || ||||| || | ||| || || | || || |||| Sbjct 17495 GAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAGTGTAATAGTCT 17437 Query 225683 TGCCCGTCAAAGTTTT 225698 | || || || ||||| Sbjct 17436 TACCAGTTAAGGTTTT 17421 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||||||||||| |||||||| |||||||||| || || ||| Sbjct 17145 GTAGATTCTTTTTGAATATTGTAATCGGACAAAGTTCGACCATCTTCTAATTGTTTGCCA 17086 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| | ||||| || || || ||||||||| Sbjct 17085 GCAAAGATCAAACGTTGCTGATCTGGTGGAATACCT 17050 >seq1489 Length=23360 Score = 165 bits (182), Expect = 2e-35 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||||| ||| ||||| ||||| ||||||||||| || | |||||||||| |||||| Sbjct 5111 ACGAAGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGT 5170 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| | || || || || || || | ||||| || || || || ||||| Sbjct 5171 ACGGCCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACC 5230 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| |||||||| || ||| || || ||| ||| ||||| || || | |||||| || | Sbjct 5231 TTCTTTGTCTTGAAT-TTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCA 5289 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| || || || ||||||||||||| ||| | |||||| Sbjct 5290 AGGTGATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 147 bits (162), Expect = 5e-30 Identities = 168/223 (75%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || |||||| |||||||| ||||||||||||| || ||||| | || || Sbjct 5795 ACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGT 5854 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || || || ||||| || || | |||||| || || || || ||||| Sbjct 5855 ACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACC 5914 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || |||||||| |||||| |||||| ||| || ||||| || | ||| || || | Sbjct 5915 TTCTTTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCA 5973 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || ||||| || || || ||||| | || | |||||| Sbjct 5974 ATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 143 bits (158), Expect = 6e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 225504 GACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTC 225563 |||||| ||||| |||||||||||||||| ||| ||||| ||| |||| |||||||| Sbjct 5579 GACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTC 5638 Query 225564 TAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTG 225623 | ||| || || || ||||| | ||||| || || || || |||||||| ||||| || Sbjct 5639 CAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTG 5698 Query 225624 GATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCT 225682 || ||| || |||||| ||| ||||| || || | || || || || || || |||| Sbjct 5699 AAT-TTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCT 5757 Query 225683 TGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| ||||| ||||| | || | |||||| Sbjct 5758 TGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 138 bits (152), Expect = 3e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | | ||||| |||||||||||||||||||||| |||||||| ||| || Sbjct 5339 ACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGT 5398 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||| || || || || || | ||| || || || || || || || Sbjct 5399 TCGGCCATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCC 5458 Query 225612 TTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||| || ||||| || ||| || |||||| |||||| || ||||| | || || || | Sbjct 5459 TTCTTTATCTTGAAT-TTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCA 5517 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | || || || || || |||||||| || | ||| | |||||| Sbjct 5518 ATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 >seq818 Length=555649 Score = 107 bits (118), Expect = 5e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||| ||||| ||||| || || ||||| ||||||||||| || || |||||||| Sbjct 14932 GAAAATTTGTCCATCGGTAATTGAAATGACATTGGTAGGGATATAGGCTGACACATCACC 14991 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||||||||||| || || || || || | |||||||||||| || | || ||| Sbjct 14992 AGCTTGTGTTTCGATGACTGGCAAAGCCGTCAATGATCCACCACCGAATTGTTCATT 15048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192505133503964