Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1658 107 2e-18 seq1705 95.1 1e-14 seq1489 95.1 1e-14 >seq1658 Length=21299 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||| | || | ||| ||||||||||| ||||| ||||| || ||| || |||| Sbjct 17845 AACACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCT 17786 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || ||| | || | | |||||| ||| || | ||||||||||| Sbjct 17785 TCCAATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCC 17726 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 ||||| |||||| | | | || |||| | | ||| | ||||| ||| Sbjct 17725 TGGATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTT 17666 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||||| ||||||||||| | |||||||||||| Sbjct 17665 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || |||||||| ||||| |||||||||| || ||| | ||||||||||||||| || Sbjct 18287 GTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCG 18228 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||| || ||| || | ||||||||||| |||||| ||| Sbjct 18227 GCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTT 18168 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATG 101219 |||| | | || || | | ||| ||| | ||| || ||||| || ||||| | Sbjct 18167 ACATTTTCAATGGTATCCGATG--GTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAG 18110 Query 101220 TTTTAATAAAAATTTGCAT 101238 |||| | || |||||||| Sbjct 18109 TTTTTACGAATATTTGCAT 18091 >seq1705 Length=717327 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||| ||||| ||||| || ||| | ||||||||| ||||| || Sbjct 502397 GTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTCCAACTGTTTACCG 502338 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||| || ||| || | ||||||||||| |||||| |||| Sbjct 502337 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTGAATTTTAGCTTTC 502278 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || || | | | ||| | ||||| || ||||| ||||||||| Sbjct 502277 ACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTTGCCGGTCAATGTT 502218 Query 101222 TTAATAAAAATTTGCAT 101238 || | |||||||||||| Sbjct 502217 TTGACAAAAATTTGCAT 502201 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || |||||||| ||||| |||||||||| || ||| | ||||||||||||||| || Sbjct 502853 GTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCG 502794 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||| || ||| || | ||||||||||| |||||| ||| Sbjct 502793 GCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTT 502734 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATG 101219 |||| | | || || | | ||| ||| | ||| || ||||| || ||||| | Sbjct 502733 ACATTTTCAATGGTATCCGATG--GTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAG 502676 Query 101220 TTTTAATAAAAATTTGCAT 101238 |||| | || |||||||| Sbjct 502675 TTTTTACGAATATTTGCAT 502657 >seq1489 Length=23360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || ||||||||||| ||||| ||||| || ||| | ||||||||| ||||| || Sbjct 5592 GTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTCCAACTGTTTACCG 5651 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||| || ||| || | ||||||||||| |||||| |||| Sbjct 5652 GCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTGAATTTTAGCTTTC 5711 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTGCCCGTCAATGTT 101221 |||| | | || || | | | ||| | ||||| || ||||| ||||||||| Sbjct 5712 ACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTTGCCGGTCAATGTT 5771 Query 101222 TTAATAAAAATTTGCAT 101238 || | |||||||||||| Sbjct 5772 TTGACAAAAATTTGCAT 5788 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 101042 GTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCC 101101 || |||||||| ||||| |||||||||| || ||| | ||||||||||||||| || Sbjct 5136 GTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGGCCATCTTCCAATTGTTTACCG 5195 Query 101102 GCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 101161 ||| | || | || ||| || ||| || | ||||||||||| |||||| ||| Sbjct 5196 GCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTTGAATTTTAGCTTTT 5255 Query 101162 ACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTTTTGCCCGTCAATG 101219 |||| | | || || | | ||| ||| | ||| || ||||| || ||||| | Sbjct 5256 ACATTTTCAATGGTATCCGATG--GTTCCACTTCCAAGGTGATTGTTTTACCAGTCAAAG 5313 Query 101220 TTTTAATAAAAATTTGCAT 101238 |||| | || |||||||| Sbjct 5314 TTTTTACGAATATTTGCAT 5332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409652282383854