Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1705 340 2e-88 >seq1705 Length=717327 Score = 340 bits (376), Expect = 2e-88 Identities = 610/880 (69%), Gaps = 12/880 (1%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| |||||| ||||||| || || |||||||| ||||| | ||| ||||| || Sbjct 625438 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTCCAAT 625497 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGA 4367 ||||| | ||||||||| ||||| ||||| | | || |||||||||||||| || | Sbjct 625498 GAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAATGTTTTTCACAATTCAAT 625557 Query 4368 GCTACAAGCAATCGGTCAGCTACAA-ATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 |||| | || || || || |||| |||| ||||| | | ||| | || | || || Sbjct 625558 TCTACCAATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGAATTCAT 625616 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 ||||| ||| || |||| || | ||||| || || ||||| || | ||| || || Sbjct 625617 GCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATACAGCATC 625676 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC--AAACAAT 4544 | || ||||| ||| | | ||||| ||| || || ||| ||||||| Sbjct 625677 GATAATAATATCAACAATTCGTTGTGGTGATGGACGATT-ACGAA-TATGGTGAAACAAT 625734 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || || |||||||||||||| || ||||| || | ||||| ||| || ||||| || Sbjct 625735 AAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGAAAATGTA 625794 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | || ||||| | || | |||||||||||||| || ||||||||||| |||||||| Sbjct 625795 AGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACCAGAAAAA 625854 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTC 4723 || || ||||| ||||| ||||| || | || || |||| | | ||| | || Sbjct 625855 AAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGAATCA-TC 625913 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGG--AATTGTGTATATA 4781 | |||| || ||||| ||||||||||| | || || || |||| |||| Sbjct 625914 CTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACGTATG-- 625971 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || |||| | || |||| | || | ||| || | || | || | Sbjct 625972 GCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAATAATGAA 626031 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||| ||||| | |||||| || ||||| ||||| || ||||| || | |||||| Sbjct 626032 TACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGTGCTTCT 626091 Query 4902 GTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTG 4961 | || ||| || || | ||| | ||| | | ||||| || || ||||| || || Sbjct 626092 GGTATTTGTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACCATCGCTT 626151 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 || |||||||| ||||| ||||| | || || | | ||| | | || | || ||| Sbjct 626152 GCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCATTTGCATTCAATTGATTC 626211 Query 5022 CAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 || |||| | ||| | ||| ||| ||||||||||| ||||| || || ||||| ||| Sbjct 626212 CAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGATGCTTCAGCT 626271 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||||| ||||| |||||| ||| |||| ||||| |||| Sbjct 626272 TTTTTATACATGATCCAAATGTCATGATATTGAATTGGAA 626311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040720838098