Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1705 125 2e-23 seq1489 125 2e-23 seq1658 118 2e-21 >seq1705 Length=717327 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| ||||| || |||||||||||||||||||| || |||| |||||||| Sbjct 502637 ACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCC 502578 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| ||||| || || | | |||||| || | | ||||||||| || |||||| Sbjct 502577 AACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGA 502518 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | ||||| ||| ||||| | ||||| ||||| Sbjct 502517 ATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTTA 502458 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| ||||| | ||||| Sbjct 502457 CCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| || || || ||||||||||||||||||| ||||||| ||||| || Sbjct 501953 ACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTCC 501894 Query 151956 A--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| || || ||||| | | |||||||| | | ||| ||||| || |||| Sbjct 501893 AATTGCTTT--CCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTT 501836 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | ||||| ||||||| | || | |||| || || ||||| | ||||| |||| Sbjct 501835 GGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTTT 501776 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || | || |||||||| | |||||| Sbjct 501775 TACCAGTCAATGTTTTCACGAAAATTTGCATT 501744 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| || || || ||||| || ||||||||||||| ||||| | Sbjct 502874 AGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGG 502815 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | ||| ||||| || || | || ||||| || | | ||| ||||| Sbjct 502814 CCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCT 502755 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| | || | | | || || || ||||| | || Sbjct 502754 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTG 502695 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||| || ||||| | ||||| Sbjct 502694 ATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 502657 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||||||| |||||||| |||||||||||||| ||||| | ||| || | |||||||| Sbjct 502182 GACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTC 502123 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| || || || || | | ||||| || | | ||| ||||| || ||||| Sbjct 502122 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTG 502063 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | |||| || || ||||| | |||||||| || Sbjct 502062 GATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTT 502003 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || || || || | ||||| Sbjct 502002 ACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||||||| || || || ||||||||||| || ||||| || |||| |||||||| Sbjct 502410 GACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTC 502351 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| ||||| ||||| | || ||||| || | | ||| ||||| || || || Sbjct 502350 CAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTG 502291 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | | | || || ||| ||||| | ||||| || || Sbjct 502290 AATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTT 502231 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | || || || || | ||||| Sbjct 502230 GCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 >seq1489 Length=23360 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| ||||| || |||||||||||||||||||| || |||| |||||||| Sbjct 5352 ACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCC 5411 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| ||||| || || | | |||||| || | | ||||||||| || |||||| Sbjct 5412 AACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGA 5471 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| ||| | || | | ||||| ||| ||||| | ||||| ||||| Sbjct 5472 ATTTTGGCTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTTA 5531 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| ||||| | ||||| Sbjct 5532 CCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 111 bits (122), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| || || || ||||||||||||||||||| ||||||| ||||| || Sbjct 6036 ACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTAATCGGACAAAGTTCGACCATCCTCC 6095 Query 151956 A--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| || || ||||| | | |||||||| | | ||| ||||| || |||| Sbjct 6096 AATTGCTTT--CCAGCAAAGATCAATCGTTGCTGGTCTGGTGGGATACCTTCTTTATCTT 6153 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | ||||| ||||||| | || | |||| || || ||||| | ||||| |||| Sbjct 6154 GGATTTTAGCTTTGACATTTTCAATAGTGTCAGATGGTTCCACTTCCAATGTAATGGTTT 6213 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || | || |||||||| | |||||| Sbjct 6214 TACCAGTCAATGTTTTCACGAAAATTTGCATT 6245 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| || || || ||||| || ||||||||||||| ||||| | Sbjct 5115 AGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGG 5174 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | ||| ||||| || || | || ||||| || | | ||| ||||| Sbjct 5175 CCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCT 5234 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| | || | | | || || || ||||| | || Sbjct 5235 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTG 5294 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||| || ||||| | ||||| Sbjct 5295 ATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 5332 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||||||| |||||||| |||||||||||||| ||||| | ||| || | |||||||| Sbjct 5807 GACAAGATGGAGAGTAGATTCTTTTTGGATGTTATAATCAGATAATGTACGGCCATCTTC 5866 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| || || || || | | ||||| || | | ||| ||||| || ||||| Sbjct 5867 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGGATACCTTCTTTATCTTG 5926 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | |||| || || ||||| | |||||||| || Sbjct 5927 GATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAATGTAATAGTCTT 5986 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || || || || | ||||| Sbjct 5987 ACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||||||| || || || ||||||||||| || ||||| || |||| |||||||| Sbjct 5579 GACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCTTC 5638 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||| ||||| ||||| | || ||||| || | | ||| ||||| || || || Sbjct 5639 CAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCCTG 5698 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | | | || || ||| ||||| | ||||| || || Sbjct 5699 AATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTCTT 5758 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || | || || || || | ||||| Sbjct 5759 GCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 >seq1658 Length=21299 Score = 118 bits (130), Expect = 2e-21 Identities = 153/210 (73%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| ||||| || |||||||||||||||||||| || |||| |||||||| Sbjct 18071 ACAAGATGGAGAGTGGATTCTTTTTGGATGTTGTAATCACTCAAGGTTCGGCCATCTTCC 18012 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| ||||| || || | | |||||| || | | ||||||||| || |||||| Sbjct 18011 AACTGTTTACCGGCAAAAATCAATCGCTGCTGATCTGGTGGGATTCCTTCTTTATCTTGA 17952 Query 152016 ATTTT-TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||| ||| ||| | || | | ||||| ||| ||||| | ||||| ||||| Sbjct 17951 ATTTTGGCTTTTCACATTTTCGATTGTATCTGATGGCTCAACTTCCAATGTAATTGTTTT 17892 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | |||||| ||||| | ||||| Sbjct 17891 ACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Score = 107 bits (118), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || || |||||||| ||||||||||| | ||||||| ||||| || Sbjct 17385 ACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTTCGACCATCCTCC 17326 Query 151956 A--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| ||||| ||||| | || ||||| || | | ||| ||||| || |||| Sbjct 17325 AATTGCTTT--CCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCTT 17268 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 | ||||| ||||||| | || | |||| || || ||||| | ||||| |||| Sbjct 17267 GGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGGTTT 17208 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || | || || || || | |||||| Sbjct 17207 TACCAGTTAAGGTTTTGACAAAAATTTGCATT 17176 Score = 105 bits (116), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || |||||||| || || || ||||| || ||||||||||||| ||||| | Sbjct 18308 AGTCGCAGTACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAATCGGACAAAGTACGG 18249 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| | ||| ||||| || || | || ||||| || | | ||| ||||| Sbjct 18248 CCATCTTCCAATTGTTTACCGGCAAAAATCAACCGTTGCTGATCTGGTGGGATACCTTCT 18189 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| ||| ||| | || | | | || || || ||||| | || Sbjct 18188 TTGTCTTGAATTTTAGCTTTTACATTTTCAATGGTATCCGATGGTTCCACTTCCAAGGTG 18129 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||| || ||||| | ||||| Sbjct 18128 ATTGTTTTACCAGTCAAAGTTTTTACGAATATTTGCAT 18091 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||| |||||||| ||||||||||| || ||||| || ||||| |||||||| Sbjct 17842 ACAAGATGGAGAGTAGATTCTTTTTGGATATTATAATCACTCAATGTTCTGCCATCTTCC 17783 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| ||||| || || | | || || || | | |||||||| || || || Sbjct 17782 AATTGTTTACCGGCAAAAATCAAACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCCTGG 17723 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 ||||| ||| || | || | | | ||||| ||| ||||| | |||||| |||||| Sbjct 17722 ATTTTAGCTTTCACGTTTTCAATGGTATCTGATGGCTCGACTTCCAAAGTAATGGTTTTG 17663 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || | || || || || | ||||| Sbjct 17662 CCGGTCAATGTTTTGACAAAAATTTGCAT 17634 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||||||||| ||||| || || ||||||||||| || || | ||| || | |||||||| Sbjct 17615 GACAAGATGGAGAGTGGATTCCTTTTGGATGTTATAGTCAGATAATGTACGGCCATCTTC 17556 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| || || || || | | ||||| || | | || || || || ||||| Sbjct 17555 AAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATCTGGTGGAATACCCTCTTTATCTTG 17496 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 |||||| ||| ||| | || | |||| || || ||||| || |||||||| || Sbjct 17495 GATTTTTGCTTTCACATTTTCAATCGTGTCCGATGGTTCGACTTCCAGTGTAATAGTCTT 17436 Query 152075 GCCCGTGAGAGTCTTCACGAAGA 152097 || || | || || || |||| Sbjct 17435 ACCAGTTAAGGTTTTGACAAAGA 17413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153795579640726