Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1705 399 2e-106 seq1703 91.5 2e-13 seq852 91.5 2e-13 seq206 91.5 2e-13 >seq1705 Length=717327 Score = 399 bits (442), Expect = 2e-106 Identities = 630/890 (71%), Gaps = 22/890 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTC 23264 ||| ||||| ||||||||||||| |||||||| ||||||||||||||| ||||| || Sbjct 625434 CATGACACCACTTTTTTGATATTCGGCAACACGTTTTTCGAAAAAATTTGATTTACCTTC 625493 Query 23265 TAATGATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGA 23324 ||||| || | ||||||||| ||||||||||| | || ||||| | ||| || | Sbjct 625494 CAATGAAATTTGTTCCATAAATTCAAATGGATTGGCCGTTTTATAAT--GTTTTTCACAA 625551 Query 23325 T--AATTCCTTTAAAAGCCTATCTGCTACAA-ATTCAATATATTGACACATCAAATCATA 23381 | ||||| || | | |||||| |||| |||||||||| | |||| || | | Sbjct 625552 TTCAATTCTACCAATAAACGATCTGC-ACAATATTCAATATAATCGGACATTAATTTTGA 625610 Query 23382 GTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAAC 23441 || || || || | | ||||| | ||||| |||||| | |||||| || || Sbjct 625611 ATTCATGCCAATCAATGAAACTGGTAATGCATCGGTCAAGAATTCCTGTTCAATCGATAC 625670 Query 23442 AGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGAT-ATTTTAAATAC--TT 23498 |||||| |||| || | |||||| || | | |||| ||| |||| | Sbjct 625671 AGCATCGATAATAATATCAACAATTCGTTGTGGT---GATGGACGATTACGAATATGGTG 625727 Query 23499 AAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGA 23558 ||||||||| ||||||||||||||||||| |||||||| | |||||||||||| || Sbjct 625728 AAACAATAAGCATGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTCGA 625787 Query 23559 AAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCC 23618 |||||| | || ||||| | || |||||||||| |||||| ||||| |||||||| || Sbjct 625788 AAATGTAAGACCAGGCATGAGGCCACGTTTTTTAAGCCAAAAAATTGCGGCAAATGAACC 625847 Query 23619 GGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATT 23678 ||||| || || || ||||| || ||||| || | | |||| | | ||||| | Sbjct 625848 AGAAAAAAAGATTCCTTCAACGGCTGCAAATGCAATCAAACGTTCAGCGAATGTAACTGA 625907 Query 23679 ATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACAC--TCAATTGTT 23736 || ||| |||| | | | ||| ||||| || || |||||| | |||| Sbjct 625908 ATCATCCTGGGTCCAACGTATAGCCCATTTAGCTTTTTTTTCTACACAAGGTAAATTACG 625967 Query 23737 TCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGT 23796 | || || || || |||||| || ||| | ||| | || |||||||| || | | Sbjct 625968 T--ATGGCATTGAATAGAAAATCTTGTTCACTACGATCCGATACATATGTATTGATCAAT 626025 Query 23797 AAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTA 23856 || ||||||||| ||||||| ||||||||| ||||| ||||| ||||||||||| | Sbjct 626026 AATGAATACATTTCTGAATGAACATTTTCAATGGCAATTTGAAAGCCATAAAAACAACGT 626085 Query 23857 GCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCA 23916 ||||| | | ||| |||||| || ||| | || || | |||||| || ||||||||| Sbjct 626086 GCTTCTGGTATTTGTACATCACGAATAAAACGTTCGGCCAGATTTTCATTGACAATACCA 626145 Query 23917 TCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG-AT-- 23973 || || |||||||| || || | |||| | | || |||||| |||||| ||| || Sbjct 626146 TCGCTTGCAGCAAAAAATGCCAATACATGTGTAATGAAATGTTTTTCAT---TTGCATTC 626202 Query 23974 AATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTT 24033 |||| ||||||| |||||| || ||| ||||| ||||||||||| || | Sbjct 626203 AATTGATTCCAATGGGCAATATCACGACTTAGATCCACTTCTTCAACTGTCCAGAATGAT 626262 Query 24034 GCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAA 24083 || || |||||||| | |||||| |||| || ||| |||||||| Sbjct 626263 GCTTCAGCTTTTTTATACATGATCCAAATGTCATGATATTGAATTGGAAA 626312 >seq1703 Length=20630 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| |||||||||||||| ||||||||| ||| || | || || || ||||| Sbjct 15214 GGTGTATTACATACAAAATTTATTATTGTTGATCGAAAAGATTTCTACATCGGTAGTGCC 15273 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAAT 139548 || ||||| ||||| ||| |||| || || |||||||| || |||| ||| | |||||| Sbjct 15274 AATATGGATTGGCGTTCATTAACACATGTCAAAGAATTGGGAATCATAATACAAAATAAT 15333 >seq852 Length=67183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| |||||||||||||| ||||||||| ||| || | || || || ||||| Sbjct 6870 GGTGTATTACATACAAAATTTATTATTGTTGATCGAAAAGATTTCTACATCGGTAGTGCC 6811 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAAT 139548 || ||||| ||||| ||| |||| || || |||||||| || |||| ||| | |||||| Sbjct 6810 AATATGGATTGGCGTTCATTAACACATGTCAAAGAATTGGGAATCATAATACAAAATAAT 6751 >seq206 Length=237414 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139429 GGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCT 139488 ||||| |||||||||||||| ||||||||| ||| || | || || || ||||| Sbjct 9161 GGTGTATTACATACAAAATTTATTATTGTTGATCGAAAAGATTTCTACATCGGTAGTGCC 9220 Query 139489 AACATGGACTGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAAT 139548 || ||||| ||||| ||| |||| || || |||||||| || |||| ||| | |||||| Sbjct 9221 AATATGGATTGGCGTTCATTAACACATGTCAAAGAATTGGGAATCATAATACAAAATAAT 9280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521476879268400