Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1705 105 5e-18 seq1489 105 5e-18 seq1658 93.3 3e-14 >seq1705 Length=717327 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| || || || ||||| ||| ||||||||||||||||| Sbjct 501978 TTGCATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTA 501919 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| | ||| || | || |||| ||||| || ||||||||||| || ||||| Sbjct 501918 ATCGGACAAAGTT--CGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGG 501861 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | |||||| || || || || || | || | || ||||| | Sbjct 501860 TCTGGTGGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGAT 501801 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||| |||| ||||| || || || || | || |||||||| |||||||| Sbjct 501800 GGTTCCACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 501745 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || || || || ||| || |||||||| || ||||| | | || | || Sbjct 502412 AAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCT 502353 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||| || |||||||||||||| || |||||||||| || | |||||| || ||| Sbjct 502352 TCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCC 502293 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || |||| || | ||||| |||| | || || |||| ||||| ||| Sbjct 502292 TGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTC 502233 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || || |||||||| Sbjct 502232 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 502201 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | ||||| || || || ||| || ||||||||||| Sbjct 502665 TATTTGCATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTT 502606 Query 44161 GTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||||| | || | || | || |||| ||| || |||||||| ||||| ||||||| Sbjct 502605 GTAATCACTCAAGGTTCGGC-CATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCT 502547 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 |||||| || | ||||| || || || || |||| || | || || || | Sbjct 502546 GATCTGGTGGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTG 502487 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 502486 ATGGCTCAACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 502429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| || || || || || || ||||||||||| || Sbjct 502206 TTGCATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATA 502147 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | || | || || || || || || ||||| ||||| || |||||||| Sbjct 502146 ATCAGATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATC 502087 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 || || | |||||| || || || || ||| |||| || | || ||||| | | Sbjct 502086 TGGTGGGATACCTTCTTTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATG 502028 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| ||||| ||||| || || | ||| || || || |||||||| Sbjct 502027 GTTCGACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 501973 >seq1489 Length=23360 Score = 105 bits (116), Expect = 5e-18 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | |||| || || || ||||| ||| ||||||||||||||||| Sbjct 6011 TTGCATACCACCACGAAGTCGTAATACGAGATGAAGGGTGGATTCCTTTTGGATGTTGTA 6070 Query 44164 ATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||||| |||| || | || |||| ||||| || ||||||||||| || ||||| Sbjct 6071 ATCGGACAAAGTT--CGACCATCCTCCAATTGCTTTCCAGCAAAGATCAATCGTTGCTGG 6128 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 |||| || | |||||| || || || || || | || | || ||||| | Sbjct 6129 TCTGGTGGGATACCTTCTTTATCTTGGATTTTAGCTTTGACATTTTCAATAGTGTCAGAT 6188 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||||| |||| ||||| || || || || | || |||||||| |||||||| Sbjct 6189 GGTTCCACTTCCAATGTAATGGTTTTACCAGTCAATGTTTTCACGAAAATTTGCAT 6244 Score = 86.0 bits (94), Expect = 5e-12 Identities = 164/238 (69%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | ||||| || || || ||| || ||||||||||| Sbjct 5324 TATTTGCATACCACCACGAAGACGTAACACAAGATGGAGAGTGGATTCTTTTTGGATGTT 5383 Query 44161 GTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||||| | || | || | || |||| ||| || |||||||| ||||| ||||||| Sbjct 5384 GTAATCACTCAAGGTTCGGC-CATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCT 5442 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGG 44279 |||||| || | ||||| || || || || |||| || | || || || | Sbjct 5443 GATCTGGTGGGATTCCTTCTTTATCTTGAATTTTGGCTTTCACATTTTCGATTGTATCTG 5502 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 5503 ATGGCTCAACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAAAATTTGCAT 5560 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || || || || ||| || |||||||| || ||||| | | || | || Sbjct 5577 AAGACAAGATGGAGGGTGGATTCTTTTTGGATATTATAATCACTCAATGTTCGGCCATCT 5636 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||| || |||||||||||||| || |||||||||| || | |||||| || ||| Sbjct 5637 TCCAACTGTTTACCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGTCC 5696 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || |||| || | ||||| |||| | || || |||| ||||| ||| Sbjct 5697 TGAATTTTAGCTTTCACATTTTCAATGGTATCGGATGGCTCGACTTCCAATGTAATGGTC 5756 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | || || || || |||||||| Sbjct 5757 TTGCCGGTCAATGTTTTGACAAAAATTTGCAT 5788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | || | ||| || || || || || || ||||||||||| || Sbjct 5783 TTGCATACCACCACGTAGACGCAAGACAAGATGGAGAGTAGATTCTTTTTGGATGTTATA 5842 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | | | || | || || || || || || ||||| ||||| || |||||||| Sbjct 5843 ATCAGATAATGTACGGCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGCTGATC 5902 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGTTCCTATGGTGTCGGCGG 44282 || || | |||||| || || || || ||| |||| || | || ||||| | | Sbjct 5903 TGGTGGGATACCTTCTTTATCTTGGAT-TTTTGCTTTCACATTTTCAATCGTGTCCGATG 5961 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| ||||| ||||| || || | ||| || || || |||||||| Sbjct 5962 GTTCGACTTCCAATGTAATAGTCTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 6016 >seq1658 Length=21299 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGT 44183 || || || ||||| ||| || ||||| ||||||||||| | | ||| || | | Sbjct 17388 AATACAAGATGAAGGGTGGATTCTTTTTGAATGTTGTAATCAGACAAAGTT--CGACCAT 17331 Query 44184 CGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTT 44243 | |||| ||||| |||||||||||||| || |||||||||| || | |||||| || | Sbjct 17330 CCTCCAATTGCTTTCCGGCAAAGATCAACCGTTGCTGATCTGGTGGGATACCTTCTTTGT 17271 Query 44244 CCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | || || || | || | || ||||| | | |||||| |||| ||||| | Sbjct 17270 CTTGGATTTTAGCTTTGACATTTTCAATAGTGTCCGATGGTTCCACTTCCAATGTAATGG 17211 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || | ||| || || || |||||||| Sbjct 17210 TTTTACCAGTTAAGGTTTTGACAAAAATTTGCAT 17177 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| ||| || || | || | |||||| || || || ||| || ||||||||||| Sbjct 18099 TATTTGCATACCACCACGAAGACGCAACACAAGATGGAGAGTGGATTCTTTTTGGATGTT 18040 Query 44161 GTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCT 44219 |||||| | || | || | || |||| ||| || |||||||| ||||| ||||||| Sbjct 18039 GTAATCACTCAAGGTTCGGC-CATCTTCCAACTGTTTACCGGCAAAAATCAATCGCTGCT 17981 Query 44220 GATCTGAAGGCACACCTTCCTTTTCCGTTATCTT--CTGCTTCAATGTTCCTATGGTGTC 44277 |||||| || | ||||| || || || || || |||| || | || || || Sbjct 17980 GATCTGGTGGGATTCCTTCTTTATCTTGAATTTTGGCT-TTTCACATTTTCGATTGTATC 17922 Query 44278 GGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | || || |||| ||||| || || || || | ||||| ||||| |||||||| Sbjct 17921 TGATGGCTCAACTTCCAATGTAATTGTTTTACCAGTCAAAGTCTTGACGAATATTTGCAT 17862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982915124602