Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq1157 154 2e-32 >seq1157 Length=991128 Score = 154 bits (170), Expect = 2e-32 Identities = 348/524 (66%), Gaps = 22/524 (4%) Strand=Plus/Plus Query 155729 TCGACTCAACGCCGTCGATTGAGCGGCGCGTACCAACCCTTCCAATTCAGCGCCGCTGTA 155788 |||| ||| || ||||||||||| || || || | ||||| | ||| || ||| | Sbjct 646014 TCGATTCATAGCAGTCGATTGAGCAGCTCGAACTAGGCCTTCAATTTCTGCACCGGAAAA 646073 Query 155789 ATTTTTAGTTTCAACG--GCTATTTTATTTAAGTCTACGTCGGAAGCTAATATGTTGTGA 155846 ||||||||| ||||| || | || | | || || || | || | | | |||| Sbjct 646074 ATTTTTAGT--CAACGTTGCCAATTCTTGAATGTTGACATCAGGTGCAATTTTTTTGT-- 646129 Query 155847 GATTT---CATTTTAGCAACGTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGT 155903 ||| ||||||| | ||| | || || ||||||| ||| || | ||||| || Sbjct 646130 -ATTGGCGCATTTTACTAGTGTGAATATTCAATATTTGAACACGGCCATCTTCATTCGGA 646188 Query 155904 AATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAG 155963 | | ||||| |||| || ||| | || || |||| | |||||||||||||| | | Sbjct 646189 AGACTGATTTCCATCTGCACTTCAAGTCGACCTGGTCGAAGCAATGCTTCGTCAATCATG 646248 Query 155964 TCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATT 156023 || | ||| |||||||| |||| ||| |||||||| || || || || || || ||| Sbjct 646249 TCTTTGCGGTTAGTCATACCGATGACTAATATGTTGTTCAACGAATCAACGCCATCAATT 646308 Query 156024 TTAGACAATAATTGATTGACTACGGCGTCGTG-CGTGGCGTT---------ATC--ACCG 156071 || | ||| |||||||| || || | ||| || || || | ||| || Sbjct 646309 TTGGCCAACAATTGATTAACGACAGTGTCATGAACTGCCGATGTTCCGGCCATCGATCCT 646368 Query 156072 CGTTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCCGCTGGCTAAA 156131 || ||| || | |||||| || |||||||| | || | ||||| ||||| || | Sbjct 646369 CGAGCTTTGCAGATAGCATCGATCTCATCGAAAATAATTATGTGTAGACCGCTATTTATA 646428 Query 156132 CCCAATTTNNNNNNNNNNNNNNNAGCCTCTTGAAACAATCGTCTGACGTTAGCTTCCGAT 156191 |||| | | ||| |||| ||||||| | | ||| ||||| ||| Sbjct 646429 CCCATTCTTGTCTGTTCCTCTTCAGCATCTTCAAACAATTTACGAATGTTCGCTTCGGAT 646488 Query 156192 TCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTT 156235 || ||||||||||||| ||||| | ||| || ||||| ||||| Sbjct 646489 TCGCCCACATATTTGTCTAATATCTGAGGTCCATTAACGATTTT 646532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667060974621360