Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20farinae_20[genbank_20GCA_5F002085665.1_202017-04- 11] 1,706 sequences; 91,935,067 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1705 149 2e-30 seq1658 149 2e-30 seq1489 149 2e-30 >seq1705 Length=717327 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| |||||| | || |||||| || || Sbjct 502660 CAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGGAT 502719 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||| ||||| || || |||||| Sbjct 502720 ACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAA 502779 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | ||| | ||||||| ||| | Sbjct 502780 CGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACATT 502839 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| || || |||||||| || |||| Sbjct 502840 CAGAAAGAATCCACCCTCCATCTTGTACTGCGACT 502874 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| | || || ||||| || || | || |||||| || ||| Sbjct 501748 CAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCTGAC 501807 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || || || |||||||| ||||| || ||||||||| Sbjct 501808 ACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAGCAA 501867 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || ||||| || | || ||||| | ||| | ||||||| ||| || Sbjct 501868 CGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAACATC 501927 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || || ||||| || || |||| Sbjct 501928 CAAAAGGAATCCACCCTTCATCTCGTATTACGACT 501962 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| || || | || || || ||||| Sbjct 502432 CAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCAGAT 502491 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| || |||||||||||||| || || ||||| Sbjct 502492 ACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAG 502551 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 ||| | || || ||||| |||||| | |||||||| | || |||| ||||| ||| | Sbjct 502552 CGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAAC-CTTGAGTGATTACAACAT 502610 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||||||||||| || || |||||||| || Sbjct 502611 CCAAAAAGAATCCACTCTCCATCTTGTGTT 502640 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || || || || | || || ||| || ||| Sbjct 501976 CAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCGGAC 502035 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || || |||||||| ||||| || || |||||| Sbjct 502036 ACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAGCAA 502095 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || |||||||| | || | | ||||||||| || Sbjct 502096 CGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAACATC 502155 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| || || |||||||| ||| Sbjct 502156 CAAAAAGAATCTACTCTCCATCTTGTCTTG 502185 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || || || || | || || || || || Sbjct 502204 CAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCCGAT 502263 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||||||||||||||| ||||| || || |||||| Sbjct 502264 ACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAGCAA 502323 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| |||||| | |||||||| | || | |||||||| || Sbjct 502324 CGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAATATC 502383 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| || || |||||||| || Sbjct 502384 CAAAAAGAATCCACCCTCCATCTTGTCTT 502412 >seq1658 Length=21299 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| |||||| | || |||||| || || Sbjct 18094 CAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGGAT 18153 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||| ||||| || || |||||| Sbjct 18154 ACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAA 18213 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | ||| | ||||||| ||| | Sbjct 18214 CGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACATT 18273 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| || || |||||||| || |||| Sbjct 18274 CAGAAAGAATCCACCCTCCATCTTGTACTGCGACT 18308 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| || || | || |||||| || ||| Sbjct 17180 CAAATTTTTGTCAAAACCTTAACTGGTAAAACCATTACATTGGAAGTGGAACCATCGGAC 17239 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || || ||||||||||| ||||| || || |||||| Sbjct 17240 ACTATTGAAAATGTCAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAGATCAGCAA 17299 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| |||||||| || | || ||||| | ||| | | ||||| ||| | Sbjct 17300 CGGTTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTTTGTCTGATTACAACATT 17359 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| || || |||||||| || Sbjct 17360 CAAAAAGAATCCACCCTTCATCTTGTATT 17388 Score = 132 bits (146), Expect = 1e-25 Identities = 160/213 (75%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || || ||||| || || | || || || ||||| Sbjct 17865 CAAATATTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCAGAT 17924 Query 177984 ACCATCGAGAACGTCAAA--CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || ||||| || || ||| | ||| ||||| || |||||||||||||| || || |||| Sbjct 17925 ACAATCGAAAATGTGAAAAGCCAAA-ATTCAAGATAAAGAAGGAATCCCACCAGATCAGC 17983 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | ||| | || || ||||| |||||| | |||||||| | || |||| ||||| ||| Sbjct 17984 AGCGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAAC-CTTGAGTGATTACAAC 18042 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||||| || || |||||||| ||| Sbjct 18043 ATCCAAAAAGAATCCACTCTCCATCTTGTGTTG 18075 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || ||||| || || | || || || ||||| Sbjct 17637 CAAATTTTTGTCAAAACATTGACCGGCAAAACCATTACTTTGGAAGTCGAGCCATCAGAT 17696 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| || || ||||||||||||||||| || || || || ||| Sbjct 17697 ACCATTGAAAACGTGAAAGCTAAAATCCAGGACAAAGAAGGAATTCCACCAGATCAACAA 17756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| || || | |||||||| || Sbjct 17757 CGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGCAGAACATTGAGTGATTATAATATC 17816 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| || || |||||||| ||| Sbjct 17817 CAAAAAGAATCTACTCTCCATCTTGTGTTG 17846 >seq1489 Length=23360 Score = 149 bits (164), Expect = 2e-30 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| |||||| | || || ||||| |||||| | || |||||| || || Sbjct 5329 CAAATATTCGTAAAAACTTTGACTGGTAAAACAATCACCTTGGAAGTGGAACCATCGGAT 5270 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||| ||||||||||| ||||| || || |||||| Sbjct 5269 ACCATTGAAAATGTAAAAGCTAAAATTCAAGACAAAGAAGGTATCCCACCAGATCAGCAA 5210 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | ||| | ||||||| ||| | Sbjct 5209 CGGTTGATTTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTACAACATT 5150 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || |||||||| || || |||||||| || |||| Sbjct 5149 CAGAAAGAATCCACCCTCCATCTTGTACTGCGACT 5115 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| | || || ||||| || || | || |||||| || ||| Sbjct 6241 CAAATTTTCGTGAAAACATTGACTGGTAAAACCATTACATTGGAAGTGGAACCATCTGAC 6182 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| || || || || |||||||| ||||| || ||||||||| Sbjct 6181 ACTATTGAAAATGTCAAAGCTAAAATCCAAGATAAAGAAGGTATCCCACCAGACCAGCAA 6122 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | ||||| || ||||| || | || ||||| | ||| | ||||||| ||| || Sbjct 6121 CGATTGATCTTTGCTGGAAAGCAATTGGAGGATGGTCGAACTTTGTCCGATTACAACATC 6062 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| ||||| || || ||||| || || |||| Sbjct 6061 CAAAAGGAATCCACCCTTCATCTCGTATTACGACT 6027 Score = 138 bits (152), Expect = 3e-27 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || ||||| || || | || || || ||||| Sbjct 5557 CAAATTTTCGTCAAGACTTTGACTGGTAAAACAATTACATTGGAAGTTGAGCCATCAGAT 5498 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| || |||||||||||||| || || ||||| Sbjct 5497 ACAATCGAAAATGTGAAAGCCAAAATTCAAGATAAAGAAGGAATCCCACCAGATCAGCAG 5438 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 ||| | || || ||||| |||||| | |||||||| | || |||| ||||| ||| | Sbjct 5437 CGATTGATTTTTGCCGGTAAACAGTTGGAAGATGGCCGAAC-CTTGAGTGATTACAACAT 5379 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||||||||||| || || |||||||| || Sbjct 5378 CCAAAAAGAATCCACTCTCCATCTTGTGTT 5349 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || || || || | || || ||| || ||| Sbjct 6013 CAAATTTTTGTCAAAACCTTAACTGGTAAGACTATTACATTGGAAGTCGAACCATCGGAC 5954 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || || |||||||| ||||| || || |||||| Sbjct 5953 ACGATTGAAAATGTGAAAGCAAAAATCCAAGATAAAGAAGGTATCCCACCAGATCAGCAA 5894 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || || ||||| || |||||||| | || | | ||||||||| || Sbjct 5893 CGATTGATTTTTGCTGGTAAACAACTTGAAGATGGCCGTACATTATCTGATTATAACATC 5834 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 ||||||||||| || || |||||||| ||| Sbjct 5833 CAAAAAGAATCTACTCTCCATCTTGTCTTG 5804 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || || || || | || || || || || Sbjct 5785 CAAATTTTTGTCAAAACATTGACCGGCAAGACCATTACATTGGAAGTCGAGCCATCCGAT 5726 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || ||| || ||||||||||||||||| ||||| || || |||||| Sbjct 5725 ACCATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAAGGTATCCCACCAGATCAGCAA 5666 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| |||||| | |||||||| | || | |||||||| || Sbjct 5665 CGGTTGATCTTTGCCGGTAAACAGTTGGAAGATGGCCGAACATTGAGTGATTATAATATC 5606 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 ||||||||||| || || |||||||| || Sbjct 5605 CAAAAAGAATCCACCCTCCATCTTGTCTT 5577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203704888692964