Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq757 179 8e-40 seq1212 114 3e-20 >seq757 Length=524386 Score = 179 bits (198), Expect = 8e-40 Identities = 377/557 (68%), Gaps = 4/557 (1%) Strand=Plus/Plus Query 281468 GATTTTACCTTTGAACCCCTTGTACCACGGTTTCATTTCGACGAGGTCCTC-TCCAGATA 281526 |||| | || | || || ||| |||| ||||||||| | ||| | ||| |||| | Sbjct 430471 GATTGTGCCAGTAAATCCTTTGAACCATGGTTTCATTG-GTCGAATTTCTCGTCCATGCA 430529 Query 281527 TCAAACGCTTCACGTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACC 281586 | ||||| || | || || || || || | ||||||||| ||||||| || ||| || Sbjct 430530 TTAAACGTTTAATATTTTCAACAATTTCCCTTGGATTATAATTGGGAATTTTTGTACTCC 430589 Query 281587 AACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAAC 281646 |||| || |||||||| | ||||| ||||||| | || ||||| || |||||| Sbjct 430590 AACCAGTACCAATACCTTCGGCTCCATTGACCAAAACCATTGGAATAATTGGAACATAAT 430649 Query 281647 ATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGAAGGTTATCATCTGTAT 281706 |||||||||||||||| | ||||||||| | ||| |||| | ||||||| || Sbjct 430650 ATTCTGGTTCAATTTTTAGATTATCATCATAAAGATAATTCAATAATGGATCATCT-AAT 430708 Query 281707 CGACGAAAACCTGTCGCGTCT-TAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCG 281765 | |||| | || || || || || | ||||| ||||| | | ||| || Sbjct 430709 TGTGGAAATAATTTCCTTGCTACAGTATTAAGCATGGTGAATATATAACGAGGACTGGCA 430768 Query 281766 TGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATG 281825 ||||| ||||| || || | | || || ||||| ||| ||||| ||||||| Sbjct 430769 GCATCTTTGCCACCTTGAAGTCGTGTACCGAATTGACCAATCGGTAACAATAAGTTAATA 430828 Query 281826 TTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCA 281885 || || || ||||| ||| || |||| || | ||||||| | ||| ||||| ||| Sbjct 430829 TTGTTACTTCCGACAAAATTTTGTGCCAAATTTATGATTGTCGACATAAGTGATACTTCA 430888 Query 281886 CCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCT 281945 || || ||||| || || |||||| | || |||| || || || || || || || Sbjct 430889 CCATGATGATAAGCACTATGTTCGCCGACCGAACCGGCTAATTGAGCCACTTTAACTTCA 430948 Query 281946 GATGTCAAGTTGCGTTTGAAAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCA 282005 | | || ||||||||| | |||| ||||| ||||| ||| || || ||| Sbjct 430949 CGTTTATCATTACGTTTGAAACAAGTAAATAACACTTTACGTTGGCCAGGTTTCAATCCA 431008 Query 282006 TCAACGACAGACGGAAT 282022 || || | || ||||| Sbjct 431009 TCCACCAACGAAGGAAT 431025 >seq1212 Length=1133891 Score = 114 bits (126), Expect = 3e-20 Identities = 255/378 (67%), Gaps = 6/378 (2%) Strand=Plus/Plus Query 61088 TCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAACAGAAAGGAC 61147 ||||||| || || ||| ||||||| ||||| |||||| | || ||| |||| || Sbjct 1007896 TCAAGCAAGTACTTCAGAATTGTATGGTAAAGTACAAGAAGTACCGCAACGTGAAACAAC 1007955 Query 61148 TCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTGGATTTGTAA 61207 || |||||||| || || || |||||||||||| || || || |||||| | Sbjct 1007956 ACCATTTTATCCACGATCTCCATACGGTGTTGCAAAATCATTTGCCTATTGGATTGTTGT 1008015 Query 61208 AAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCG-ATTTGTTTCAATCACGAGA 61266 ||||| || || | |||| |||||||| || | | | ||| |||||||| || Sbjct 1008016 CAATTATCGTGAAGCTTATGAAATGTTTG-CCGTCAATGGTATTCTATTCAATCATGAAT 1008074 Query 61267 GTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGCAAATATTT 61326 || | | ||| | ||||| || ||||| ||||| | || ||||| ||| Sbjct 1008075 CACCTAGACGTGGTGAAACATTTGTCACACGTAAGATTACACGTGGTGTGGCAAAAATTG 1008134 Query 61327 TTAACGGTGTCG--AAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGAGATTGGGG 61384 || | ||| || ||| ||| | | || || | || || ||| |||||||||| Sbjct 1008135 TT--CTTAATCGACAAGAATTCATCGAATTGGGTAATTTGGATTCAAAACGAGATTGGGG 1008192 Query 61385 ATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACTCCAGATGA 61444 |||| |||||| | || || |||||||| ||||| |||||||| | ||| || || Sbjct 1008193 CCATGCACGTGATTATGTTGAAGCCATGTGGTTAATGTTACAACAAGAAAATCCGGAAGA 1008252 Query 61445 CTACGTTATTGCGACTGG 61462 | || ||||| || || Sbjct 1008253 TTTTGTCATTGCAACCGG 1008270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057806082444860