Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020
17-06-21] 1,322 sequences; 70,764,025 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq1 223 4e-53
seq335 87.8 2e-12
>seq1
Length=3593316
Score = 223 bits (246), Expect = 4e-53
Identities = 594/894 (66%), Gaps = 24/894 (3%)
Strand=Plus/Minus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
||||| || |||| || ||| ||| |||||||| ||||| || | ||| || ||||
Sbjct 930126 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAAT 930067
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAA-AATATTTTAGAGTACCCCAG 16782
||||| | ||||| |||||||| ||||| || | | | ||| |||| | | | |
Sbjct 930066 GATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAA- 930008
Query 16783 TTCGGCGATTAATCTATCCGCTACAA-ATTCTATATATTGGCACATTAATTC-GCAGTTC 16840
||| | | ||| | ||| || |||| |||| ||||| | | ||||||||| ||| |||
Sbjct 930007 TTCAACCAATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCA-TTC 929950
Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900
|| || || | ||| || | || || || | |||| ||| || ||| ||| ||
Sbjct 929949 ATACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCA 929890
Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGA---TGTTTAAAC 16957
|| ||||||| | ||| ||||| || | || | | ||| || || | ||||
Sbjct 929889 TCAATAATAATTTCAACAATTCGTTGT---GATGATGGACGATTACGAATATGATGAAAC 929833
Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017
| ||||| || ||||| ||||||||||| || || | || | ||| || |||||
Sbjct 929832 AAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAG 929773
Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077
|| | || ||||| || ||||| |||| |||||| || || || || || || |||
Sbjct 929772 GTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAA 929713
Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT---CGCGTC- 17133
|| ||||| || || || | ||||| || ||||| |||||||| | || || ||
Sbjct 929712 AAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCA 929653
Query 17134 -TTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192
|||| | || || |||| | ||||||| || || ||| | |
Sbjct 929652 TCTTGTGTCCAACGTAT-----AGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTAC 929598
Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252
||| || || |||| |||| ||| | | || || ||| |||| || | ||
Sbjct 929597 GTATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATA 929538
Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312
|||||||| || || | || || || || || |||||||| ||||| || || |
Sbjct 929537 ATGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTG 929478
Query 17313 CTTCCGCTATTTGAACTTCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371
|||| | |||||| || | |||| | || ||||| |||| |||||| || || || ||
Sbjct 929477 CTTCTGGTATTTGTACAT-CACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCA 929419
Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431
|| || || || ||||| ||||||| ||| |||||||| |||||| | || | |
Sbjct 929418 TCACTTGCAGCAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAAT 929359
Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491
||| | | ||| | | || ||| |||||||| |||||||| ||
Sbjct 929358 TTATTCCAATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCT 929299
Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545
| || ||||| ||||| |||||||||||| ||||| || || || | ||||
Sbjct 929298 TCAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACA 929245
>seq335
Length=939964
Score = 87.8 bits (96), Expect = 2e-12
Identities = 123/173 (71%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296
|| || ||||| || | ||||||| | || ||||| ||||| ||||| || | ||| ||
Sbjct 900033 TAGGTGTCGATCAGCAAGCTGTACGTCTCCGAGTGGATGTTTTCCATCGCAACCTGGAAC 899974
Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356
||||||| ||| | | | | || | ||| || | || || || |||||
Sbjct 899973 GCGTAAAACTCGCGGACAGCGGGCAGCTGCATTTCGACCAAAAAGCGGCTGGCGAGATTC 899914
Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409
||| |||||||||||||||||| ||||||||||| | | ||||| |||||
Sbjct 899913 TCGAGCACGATGCCGTCGCTCGCCGCGAAAAACGCGAGCACGTGCTTGATGAA 899861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517537047558960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |