Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dermatophagoides_20pteronyssinus_20[genbank_20GCA_5F001901225.2_2020 17-06-21] 1,322 sequences; 70,764,025 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1 223 4e-53 seq335 87.8 2e-12 >seq1 Length=3593316 Score = 223 bits (246), Expect = 4e-53 Identities = 594/894 (66%), Gaps = 24/894 (3%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 ||||| || |||| || ||| ||| |||||||| ||||| || | ||| || |||| Sbjct 930126 ACACCACTTTTTTGATATTCGGCAACACGTTTTTCAAAAAAATTTGATTTACCTTCTAAT 930067 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAA-AATATTTTAGAGTACCCCAG 16782 ||||| | ||||| |||||||| ||||| || | | | ||| |||| | | | | Sbjct 930066 GATATTTGTTCCATAAAATCAAATGGATTTGTTGTTTTATAATGTTTTTCACAATCTAA- 930008 Query 16783 TTCGGCGATTAATCTATCCGCTACAA-ATTCTATATATTGGCACATTAATTC-GCAGTTC 16840 ||| | | ||| | ||| || |||| |||| ||||| | | ||||||||| ||| ||| Sbjct 930007 TTCAACCAATAAACGATCGGC-ACAATATTCAATATAATCGGACATTAATTTAGCA-TTC 929950 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || | ||| || | || || || | |||| ||| || ||| ||| || Sbjct 929949 ATACCGATCAATGATACTGGTAATGCATCGGTAAGAAATTCTTGTTCAATATTAACAGCA 929890 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGA---TGTTTAAAC 16957 || ||||||| | ||| ||||| || | || | | ||| || || | |||| Sbjct 929889 TCAATAATAATTTCAACAATTCGTTGT---GATGATGGACGATTACGAATATGATGAAAC 929833 Query 16958 ATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAAT 17017 | ||||| || ||||| ||||||||||| || || | || | ||| || ||||| Sbjct 929832 AAAAGACAGGCAAAATCACAATGTAATCCTTCATCACGTGAAATCAATTCATTTGAAAAG 929773 Query 17018 GTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAA 17077 || | || ||||| || ||||| |||| |||||| || || || || || || ||| Sbjct 929772 GTAAGACCAGGCATTAGGCCACGTTTTTTTAGCCAAAAAATTGCTGCAAATGAACCGGAA 929713 Query 17078 AAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGT---CGCGTC- 17133 || ||||| || || || | ||||| || ||||| |||||||| | || || || Sbjct 929712 AAAAATATTCCTTCAACAGCAGCAAATGCAATTAAACGTTCGGCAAATGTAACCGAATCA 929653 Query 17134 -TTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTT 17192 |||| | || || |||| | ||||||| || || ||| | | Sbjct 929652 TCTTGTGTCCAACGTAT-----AGCCCATTTAGCTTTTTTCTCTACACAAGGTAGATTAC 929598 Query 17193 CTATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTA 17252 ||| || || |||| |||| ||| | | || || ||| |||| || | || Sbjct 929597 GTATAGCATTGAATAGAAAATCTTGTTCATTACGATCCGATACATAGGTATTAATCAATA 929538 Query 17253 GGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGG 17312 |||||||| || || | || || || || || |||||||| ||||| || || | Sbjct 929537 ATGAATACATTTCTGAATGAACATTTTCGATAGCAATTTGAAATCCATAAAAACAACGTG 929478 Query 17313 CTTCCGCTATTTGAACTTCCACGTA-GAATCGTTCCGCTAGATTTTCGTTCACGATGCCG 17371 |||| | |||||| || | |||| | || ||||| |||| |||||| || || || || Sbjct 929477 CTTCTGGTATTTGTACAT-CACGAATAAAACGTTCAGCTAAATTTTCATTAACAATACCA 929419 Query 17372 TCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGA 17431 || || || || ||||| ||||||| ||| |||||||| |||||| | || | | Sbjct 929418 TCACTTGCAGCAAAAAAAGCCAATACATGTGAAATGAAATGTTTTTCATTCGAATTTAAT 929359 Query 17432 ACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCC 17491 ||| | | ||| | | || ||| |||||||| |||||||| || Sbjct 929358 TTATTCCAATGTACAAGATCATGGCTTAGATCTACTTCTTCAACTGTCCAAAATGATGCT 929299 Query 17492 ACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAACA 17545 | || ||||| ||||| |||||||||||| ||||| || || || | |||| Sbjct 929298 TCAGCTTTTTTGTACATTGTCCAAATATCATGATATTGAATTGGAAACAAAACA 929245 >seq335 Length=939964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 17237 TACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAAT 17296 || || ||||| || | ||||||| | || ||||| ||||| ||||| || | ||| || Sbjct 900033 TAGGTGTCGATCAGCAAGCTGTACGTCTCCGAGTGGATGTTTTCCATCGCAACCTGGAAC 899974 Query 17297 CCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTT 17356 ||||||| ||| | | | | || | ||| || | || || || ||||| Sbjct 899973 GCGTAAAACTCGCGGACAGCGGGCAGCTGCATTTCGACCAAAAAGCGGCTGGCGAGATTC 899914 Query 17357 TCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||| |||||||||||||||||| ||||||||||| | | ||||| ||||| Sbjct 899913 TCGAGCACGATGCCGTCGCTCGCCGCGAAAAACGCGAGCACGTGCTTGATGAA 899861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537047558960